Charadrius vociferus (killdeer): 104281582
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Entry
104281582 CDS
T08577
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-4(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf04510
Focal adhesion
cvf04512
ECM-receptor interaction
cvf04518
Integrin signaling
cvf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104281582
04518 Integrin signaling
104281582
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104281582
09142 Cell motility
04820 Cytoskeleton in muscle cells
104281582
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cvf04147
]
104281582
00536 Glycosaminoglycan binding proteins [BR:
cvf00536
]
104281582
Exosome [BR:
cvf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104281582
Glycosaminoglycan binding proteins [BR:
cvf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104281582
Hyaluronan
Extracellular matrix or blood plasma proteins
104281582
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
Motif
Other DBs
NCBI-GeneID:
104281582
NCBI-ProteinID:
XP_009877908
LinkDB
All DBs
Position
Unknown
AA seq
1483 aa
AA seq
DB search
MDDWKPLIVLLFVSTFCSIDAQQTVCSKASIADIIFLIDGSWGIGTKNFKIMQDFWYTMV
NGFDIGHDKICVGMIQYSNVPYTEFLLNACYNKDDTLQKIQKLHYKGGASAGSQKEECVP
QITVVVTNGQAEDDVQNPATAIKDVYHVVLSHSILQMLCVTVEEITGPATQVAHAWRKAT
LADVVFLVDTSTNIGQEGFQKVKNFLCTLISSLDVGLDAIQVGLAQYSDETYQKVSLNQY
LKSDVLEQIENLPYRSGEVYTGRALDFSRAKGYVPQVAILITSGASSDEVELPARKLRNR
DIAHYAVGTGVQNTAELQQIARKPFDCNIGISIAVDISRRMQPASTVLLKQKLQAFLPKL
LLQMKSLPNTSCNAGSSVNIRFKFQVLAQTKQFIFDSDFEDYNEENIQKFLDAQTTVDTY
LNADFLQALEEKLFSVTSAKVKVLLVFSDGLDDSLEDLRKAADSLRFKGLDALLLVGLDN
TQNLSELQEIEFGRGFGYNEPPSVGFAEIANILQRNLDTVAERKCCKVVCKCLGENGDRG
GQGSPGSKGSTGYRGSPGHPGEEGGIGERGPVGFNGTQGDRGCPGARGHKGSRGYRGSQG
EHGESGFDGTDGEQGEHGFPGPSGDKGNPGKQGRKGPRGEPGERGESGLRGDHGDPGTSN
NIPGPKGEKGNAARQGDPGPHGLQGEQGDAGPDGAAGRRGPPGIKGEQGDLGEAGYPGDS
GLPGPQGPRGLQGIRGPPGPQGVPGPLASLGAPGSPGSVGKLGARGAKGEAGDPGEKGPV
GPAGWRGMPGMDGRDAYGPEGSKGAKGESGFIGYPGSEGEDGDPGIPGAEGPKGVRGRRG
NAGTPGSLGDPGDQGPSGPMGAKGPMGTIVMEPCELVNFTRKNCPCSSDTCPVYPTEVVF
AFDMSEDVTSAAFERMRNIVMLLLKTIKISESNCPTGARVSVVSFNTNTRYLIRFSEFQK
NSLLLRAVQRIPLERSTGKRNIGAAMRFVSRNVFKRIRQGILTRKVAIFFANGPSQDDVA
ISTAVLELSALDITPVVIAFSEVPNVRRAFSIDDTRRFRLFVWERQQDESLESITDCTLC
FDKCKPSTNCEVPFSPPVLMDMDITYIMDSSRRISIEEFQRAKDFVSNMLDQFVVSSQPN
ESYGGIRVAVVQQAPRSFLPDRNQTPVALEFDLVTYSNKELMKKHIQESVHQLEGPSAIA
SALQWTVENVFFKAPRQRKHRVIFAIVGSKTSTWDREKLREISLGAKCQGFTLFTLALGN
DVSDNQLIELSGSPTDQHLLTLGRVSTSEMVYAQRFSRAFLNLLQQEMNSYPSPELQEEC
EDLDQGNTQQQVSMIERMPFPGADETGYSHGLEDIERTESSILENIRETTTEPVYTMPEM
RYDYEENDYFTEEDTEGEKPQEYGEAQENEENVEAAVKTTAAYSDYDACDLGQDNGECLN
XVLKWYYDKEQKMCGQFWYGGCGGNKNRFETQEQCGFLCIESS
NT seq
4452 nt
NT seq
+upstream
nt +downstream
nt
atggatgactggaaaccacttattgttcttctctttgtttccaccttctgctctatagat
gcacagcagactgtctgcagcaaagcttctatagcagacatcatcttcctcatagatgga
tcctggggcatagggacaaagaactttaagatcatgcaagacttctggtacacaatggtc
aatggctttgatattgggcatgacaaaatctgtgttggtatgattcagtacagtaatgtg
ccatacaccgaattcttgttgaacgcttgctataacaaggatgataccttacagaagata
cagaaattacattacaaaggaggagcaagtgcaggtagccaaaaggaagaatgtgttcct
cagatcactgtggtggtaacaaatggacaggctgaagatgatgttcaaaacccagccaca
gcaatcaaggatgtgtatcatgttgtactctctcacagtattctacagatgctttgtgtt
actgtagaggagataactggaccagctactcaggttgcccatgcttggagaaaggccacg
ttggcagatgttgtctttttagtggatacttcaacgaatattggccaggaaggctttcag
aaagtcaagaactttctctgcaccttgatttcaagtcttgatgttggccttgatgcgatc
caagttgggctggcacaatatagtgatgagacttaccaaaaagtctcgctgaatcagtat
ttgaaaagtgatgttttggagcagattgagaatttgccatataggagtggagaagtttac
acagggagagctctggattttagcagagctaagggttatgtcccgcaggtagccattctg
atcaccagtggagcgtccagtgatgaagttgaattgcctgccaggaaactgaggaacaga
gacattgcccactatgctgtaggaactggtgtccagaatacagctgagcttcagcaaata
gcccgcaaaccttttgattgcaacataggtatttctatagcagttgatatttcaaggcgc
atgcagccagcatccacagtgcttctgaaacagaaattgcaagcattcctccccaagctt
ttactccagatgaaatcactgccaaataccagctgtaatgctggctcttcggtcaacatt
agattcaagttccaagtattggcacagaccaaacaattcatctttgactctgattttgaa
gactataatgaagagaatatccagaagttcttagatgcacagaccactgtggacacctac
ttgaatgcagacttcttacaggcacttgaggagaagctctttagtgtgacctctgctaaa
gttaaggttctgttagtattttcagatgggctggacgattcactggaagatctcagaaaa
gcagctgactcacttcgctttaaaggtcttgatgcacttctattagttggcctggataat
acacagaatttgtctgaactccaggaaatagagtttggcagagggtttggatacaatgaa
cctccgagtgttgggtttgcagagattgcaaacatcttgcagagaaatcttgatactgtt
gcagaaaggaaatgttgtaaggttgtttgtaaatgccttggagaaaatggtgatcgtggt
ggccagggaagtcctggaagtaagggaagtacgggatacagaggatctcctggccatcct
ggtgaggaaggtggaattggagagagaggcccagttggtttcaatgggactcaaggagac
aggggatgtccaggtgccagaggccataaggggtccagaggctacagaggaagtcagggt
gaacatggtgagagtggatttgatggtactgatggagagcagggagaacatggatttcct
ggaccttctggagataaaggcaacccaggaaaacagggcagaaaaggccccagaggagaa
ccaggtgaacgaggagaatctggtctaagaggagatcatggagatcctgggactagcaat
aatattcctggtcctaagggtgaaaagggaaacgcagcaaggcagggagacccaggacca
catggactccaaggagagcagggtgatgctggccctgatggtgcagcaggtcgaagaggc
cctccaggtataaagggtgagcaaggagatctgggggaggcaggttacccaggagactca
ggtcttccaggtccacagggcccaagaggactacaagggatcagaggacctccaggacca
caaggcgtgccaggccctctggctagtctgggggccccaggttcacctggctctgttggg
aagttaggtgcaagaggagcaaagggtgaagctggtgaccctggagagaagggcccagtg
ggaccagcaggatggagaggcatgcctggcatggatggcagagatgcctatggtcctgaa
gggagcaaaggagcaaagggagaatctggattcataggatatcctggttcagagggagaa
gatggagacccaggcattccaggagctgaaggacccaaaggagttaggggtagaagaggt
aatgctggtacaccaggttccctgggagatccaggggaccaagggccatcaggacctatg
ggtgccaagggaccaatgggcaccattgtaatggaaccttgtgaacttgtgaattttaca
cgaaaaaactgcccttgctcatcagacacatgcccagtttatccaactgaagtggtgttt
gcctttgatatgtctgaagatgttacgtcagctgcatttgaaagaatgaggaacatcgtt
atgttattgctgaagaccattaagatcagtgaaagcaattgcccaacaggcgctcgtgtc
tctgttgtttctttcaacaccaatacacgatatctcatccgattctcagaattccaaaaa
aacagcttgctgctacgagcagtccagagaataccgctggagagatccactggaaaacgt
aatattggggcagccatgagatttgtttcacgaaatgtcttcaaacgtattcgtcagggc
atcctcacaagaaaagttgccatattttttgccaatggtccatcacaggatgatgttgcc
atcagcacagctgtacttgagttgagtgccttggatatcactccagtggttattgccttc
agtgaagtgccaaatgtcagacgtgctttctcaattgatgatactagacgatttcgatta
tttgtttgggaaagacaacaggatgaaagtttggagagcatcacagactgtacgctttgc
tttgataaatgcaaaccaagtaccaactgtgaggtgcccttttctccccctgttctgatg
gatatggatataacttacatcatggacagctctcgccgcatcagcattgaagagtttcag
agagccaaagactttgtgagcaacatgctagatcagtttgtcgtttcctcacagccaaac
gaatcatatggaggcatcagagtggcagtggtgcagcaggctcccaggagcttcctgcct
gacaggaaccagaccccagtggccttggagtttgatctagtcacatacagcaataaagaa
ttgatgaagaaacatatacaagagtccgttcaccaactggaagggccatcagccattgct
tctgccctacagtggacggttgaaaatgtgttctttaaagcccccagacaaagaaaacac
agggtcatatttgcaatagttggaagtaaaacaagcacatgggacagagaaaagctgaga
gagatttccctcggagctaagtgccaaggattcaccttgttcactcttgcgcttggcaac
gatgtgagtgacaatcagctgattgagctgtcaggctcccccacagaccagcacttactg
acactgggtagggtttcaacgtctgagatggtgtatgctcagaggtttagccgggcattc
ctaaatcttctacaacaagaaatgaacagttatccttcacctgaacttcaagaagagtgt
gaagacttagatcagggaaacacacaacagcaagtgtctatgattgaaaggatgccattt
cctggagctgatgaaactggttacagtcatggtttagaagacattgaaagaactgaaagt
agtatcctggagaatattagagagaccaccacagaacctgtatacacaatgccagaaatg
agatatgattatgaggagaatgactatttcacagaggaagatactgaaggagaaaagcca
caagagtatggggaggctcaggagaatgaggaaaatgttgaggcagcagtaaaaactaca
gctgcctatagtgattatgatgcatgtgaccttggtcaagataatggagaatgtctgaat
taagttctgaagtggtactatgacaaagagcagaaaatgtgtggtcaattctggtacggg
ggctgtggaggcaataaaaatagatttgaaacacaagaacaatgtggattcttgtgtata
gagtcttcctag
DBGET
integrated database retrieval system
