Charadrius vociferus (killdeer): 104281637
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Entry
104281637 CDS
T08577
Symbol
SOX5
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor SOX-5
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
cvf
Charadrius vociferus (killdeer)
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cvf03000
]
104281637 (SOX5)
Transcription factors [BR:
cvf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
104281637 (SOX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
DsbA_N
Motif
Other DBs
NCBI-GeneID:
104281637
NCBI-ProteinID:
XP_009877970
LinkDB
All DBs
Position
Unknown
AA seq
739 aa
AA seq
DB search
MSSKRPASPYGEADGEVAMVTSRQKVGEEESDGLPAFHLPLHVSFPNKPHSEEFQPVSLL
TQENCGHRTPTSQHNTMEVDGNKVMSSFAPHNSSTSPLKAEEGGRQSGEPLSSTALGTPE
RRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPE
SLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQ
QLLQQQHKINLLQQQIQFQGQLPPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGCSNP
YPVQRIPTPMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGGKIPGIPQGNLGAAVSPTS
IHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPTSPTSPHMPTLRINSGASSLKSSV
PATLASPSARANTIGYLNDHDAVTKAIQEARQMKEQLRREQQVLDGKVAVVNSLGLNNCR
TEKDKTTLETLTQQLAVKQSEDGKFSHAMMDFNMSGDSDGSAGVSESRIYRESRGRGSNE
PHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLS
KQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATA
GVVYPGAIAMAAKXTSSPEPGMPVIQSTYGIKGEEPHIKEEMQTDDVNGEIYDEYDEEED
DPDADYGSDSENHIAGQAN
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaagcgaccagcctctccgtatggggaagcagatggagaggtagccatggtg
acaagcagacagaaagtgggagaagaggagagtgacgggctcccagcctttcaccttccc
ttgcatgtgagttttcccaacaagcctcactctgaggaatttcagccagtttctctgctg
acgcaagagaactgtggccataggactcccacttctcagcacaacacaatggaagttgat
ggcaataaagtgatgtcttcatttgccccgcacaactcatctacctcacccttgaaggca
gaagaaggtgggcgtcagagtggagaaccgttgtccagcacagccctgggaacccctgaa
aggcgtaaagggagcctagcggatgttgtagacacccttaagcaaagaaaaatggaagag
ctcataaaaaatgagccagaagaaactcccagtattgaaaagctactatcaaaggactgg
aaagacaagcttcttgccatgggatcagggaactttggagaaataaaagggactccagaa
agcctcgctgagaaagaaaggcagctcatgggtatgatcaatcagctgaccagtttgcga
gaacagctgctagcagctcacgatgaacagaagaaactggctgcatcacagatcgagaaa
caacgccaacaaatggagctggctaagcagcaacaagaacagattgcaagacaacagcag
cagctcctgcagcagcaacacaaaattaaccttcttcagcaacagatccagttccagggt
cagctgcctccattaatgattcccgtattccctccagaccaacgaaccctagcagcagct
gcacagcaaggattccttcttcctcctggtttcagctacaaagcgggatgcagtaaccct
tacccggttcagcggatcccaactcccatggcagctgctgccgcagcaacaccaggctta
ggcccgctccaactgcagcagttgtatgctgcccaacttgctgcgatgcaagtgtctccg
ggagggaagatacctggcataccccagggtaaccttggtgctgctgtatcccctaccagc
atccacacagacaagagcacaaacagccctccacccaaaagcaaggatgaagtagcccag
cctctgaacctttcagccaaacccaagacatctgatggcaagtctcccacatcacccacc
tctcctcatatgccaactctgagaataaatagtggggccagttcactaaaatcctccgtg
ccagcaacattagctagtccttcggccagggctaacacaataggttatttaaatgaccac
gatgctgttaccaaggcaatccaagaggcccggcagatgaaggagcaacttcggagggaa
caacaggtgctggatgggaaggtggcggttgtgaacagcctgggtctcaataactgcagg
acagaaaaggacaaaacaacactggagaccctgactcagcaactggcagtaaaacagagt
gaagacgggaagtttagccacgcaatgatggatttcaacatgagtggagattctgatgga
agtgcgggagtttcagagtctagaatttatcgggaatccagagggcgtggtagcaatgag
ccccatatcaagcgccccatgaatgcattcatggtgtgggctaaagatgaacggaggaag
atccttcaagccttccctgacatgcacaactccaatatcagcaagatactaggatctcgc
tggaaagctatgacaaacctagagaagcagccatactatgaggaacaggcgcgactcagc
aagcagcacctggagaaatacccagactacaaatacaagccaaggccgaagcgtacctgc
cttgtagatggcaaaaaattacgcattggcgagtacaaggcaatcatgcgcaacagacgc
caggagatgaggcagtattttaacgttgggcaacaagcacagattcccattgccaccgcg
ggcgtagtttacccaggagccattgccatggcagcaaagnncaccagcagcccggagccc
gggatgcccgtcatccagagcacttacggcatcaaaggcgaggagcctcatatcaaggaa
gagatgcagaccgatgacgtcaatggagaaatctacgatgaatacgatgaggaagaggat
gaccctgatgcggactatggcagtgacagtgaaaatcacattgcagggcaagccaactga
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integrated database retrieval system
