KEGG   Charadrius vociferus (killdeer): 104282543
Entry
104282543         CDS       T08577                                 
Symbol
SMU1
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
cvf  Charadrius vociferus (killdeer)
Brite
KEGG Orthology (KO) [BR:cvf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cvf03041]
    104282543 (SMU1)
Spliceosome [BR:cvf03041]
 Complex B
  Other components
   Complex B specific factors
    104282543 (SMU1)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_Vps41 Beta-prop_TEP1_C Ge1_WD40 WD40_MABP1-WDR62_1st Beta-prop_Nup120_160 Beta-prop_NWD2_C Beta-prop_NUP159_NUP214 Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_DCAF4 LisH_TPL Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N Beta-prop_SCAP WD40_RFWD3 Beta-prop_WDR75_2nd Beta-prop_VPS8 Beta-prop_EIPR1 Beta-prop_BBS7 Beta-prop_DCAF12 Beta-prop_IP5PC_F TFIIIC_delta DUF7165 VPS8_N Beta-prop_NOL10_N PROPPIN zf_topless
Other DBs
NCBI-GeneID: 104282543
NCBI-ProteinID: XP_009878951
LinkDB
Position
Unknown
AA seq 499 aa
MQYLKENSLHRALATLQEETTVSLNTVDSIESFVADINSGHWDTVLQAIQSLKLPDKTLI
DLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENLLARSYFDPREAYPD
GSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPPGMTIDLFRGKAAVK
DVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKY
QAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLS
FSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVK
VWNVKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRS
FSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHP
HQNLIATYSEDGLLKLWKP
NT seq 1500 nt   +upstreamnt  +downstreamnt
atgcagtacctgaaagagaacagcctccaccgagccctcgccacccttcaggaggaaacg
actgtgtccctcaacactgtggacagtattgagagctttgtggcagacatcaacagcggg
cattgggacacagtgctgcaagccatacagtcgctgaagctgcctgacaagaccctcatt
gatctctacgagcaggttgtgctggagttgattgagctccgggaactaggtgctgccagg
tctctcctgagacaaacggatcccatgatcatgctaaaacaaactcagcctgagcggtac
atccacctcgaaaaccttctggccagatcttactttgatcctcgtgaggcctacccagat
ggaagtagcaaagagaagcggagagctgctattgcacaagcgttagctggagaagtcagt
gtggtacctccatctcgtcttatggcattgttggggcaggcactgaaatggcagcagcat
cagggcctgcttcctcccggtatgacaattgacttgttcagaggcaaagcagctgtgaaa
gacgtagaagaagaaaagttccccacgcagctaagcagacacattaagtttgggcagaag
tcacatgtggagtgtgctcggttttccccagatggacagtatctggttactggctctgtt
gatggtttcattgaagtatggaacttcactacgggaaagattaggaaggatctgaagtac
caggcacaagataattttatgatgatggatgatgcagtgctctgtatgtgcttcagtaga
gatacagaaatgctagcaactggagcacaagatggaaagatcaaggtgtggaaaatccag
agtggtcagtgtctgagaagatttgaacgagcacacagtaaaggtgttacatgcctcagt
ttctccaaagacagcagccaaattcttagtgcttcttttgatcagacaatcaggattcat
ggtttaaagtctgggaaaactttaaaggaattccgtggtcattcttccttcgtcaatgaa
gctacttttacccaggatggccactatattatcagtgcatcctctgatggcacagtgaag
gtttggaatgtgaagacgacagagtgctcaaacaccttcaaatctcttggcagcaccgct
gggacagacattactgtgaacagtgtgattctgctccctaaaaacccagaacactttgtt
gtttgcaacaggtcgaatacagtcgtcatcatgaatatgcaaggacaaattgtaagaagt
tttagctctggtaagagagaaggtggtgactttgtctgctgtgcgctttcacctcgtggt
gaatggatctactgtgttggtgaagattttgtgctctattgctttagcacagtgaccggc
aagctggagagaactctgactgttcatgaaaaagatgtcattggcattgctcatcacccc
caccagaacctgattgccacttacagtgaagatggcctcctcaagctctggaagccatag

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