Charadrius vociferus (killdeer): 104282631
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Entry
104282631 CDS
T08577
Symbol
PCDH1
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
104282631 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cvf01009
]
104282631 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cvf04515
]
104282631 (PCDH1)
Protein phosphatases and associated proteins [BR:
cvf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104282631 (PCDH1)
Cell adhesion molecules [BR:
cvf04515
]
Cadherins
Protocadherins
104282631 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
K319L-like_PKD
TMEM154
Mid2
Syndecan
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
104282631
NCBI-ProteinID:
XP_009879047
LinkDB
All DBs
Position
Unknown
AA seq
1294 aa
AA seq
DB search
MRWLHPTLPLEPHSEPALPEQDCSSSTLHYCPPETLGAEEHPSSWRLRSRRELVWESRGG
LEQAPGLPPPSPKPPVRKTGSGPSGVQIGSAPLQRRMKPLASCLGLWLFFQFPALVSGTR
VVYKVQEEQPPNTLIGSLASDYGFPDVGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRES
LRDCQHLLPGEPCYLEFEVSITDLILNSSPRLLEGQIEVLDINDNTPNFASPVLTLSIPE
NTNIGTLFPIPLAMDRDSGPNGVASYELTAGPEAQELFGLQVAEDQDEKQPQLIVMGNLD
REQWDSYDLTIKVQDGGNPPRASSALLRITILDMNDNAPKFEKALYEAELSENSPMGHSV
LQVKANDSDQGANAEIDYSFHQASDMVRRLLRLDRTTGLITVQGPIDREDVNILKFSVMA
KDKGANPKSARTQVVVTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQV
SDRDEGENAVVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYESVKEYTIEIVAV
DSGNPPLSSTNSLKVQVVDVNDNAPVFSQSFTEVAFPENNEPDDLVMEVSASDADSGSNA
KLVYSLVTDPSSKGAFTIDPDSGEIRVKAVLDREQRERYEFLVVAADKGSPSLKGTASVA
INVMDRNDNDPKFMLSGYNFSVMENMPPLSPVGMVTVIDADKGENARIQLSVEQDNGDFV
IQNGTGTILSSISFDREQQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFITSPS
NATYKHILPHTSPGQQVSKVKAEDIDSGVNAELTYSITGGNPFELFQISPHSGDITLEKE
ILRKHHGLHRLVVRVNDKGKPSRHGTALVHFYVNETLANRTLLDTLVGHSLDTPLDIDIA
GDPEYERSKQRSNILFGVIAGIVAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKDLYAP
KQASKSGKSKSKVKKSKSPKPPKPTEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPP
GSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDY
SYRTNPQKYTNKQLPHRRVTFSAASQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIG
PLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECTEFGHSDTCWMPGQSS
PSRRPKNALKLSTFVPYQDRGSQEQVGNGSPRLSEERSTKMANLRLLPTYSAFSNSSHEP
CKDSPMEEIPLTQTSDFQPATTPSSQTTKREIYL
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atgaggtggctgcaccccaccttgcccctagagccccactcggagcccgctctccctgag
caggactgctcctcctccaccctccactactgtcctccagaaaccctgggggccgaggag
caccccagctcctggcggctgaggagccgaagggagctggtctgggagtcccgtggaggg
ctggagcaggctcctggcctcccgccaccatcccccaaacctcctgtgaggaaaaccggt
tccggcccatctggagtccagatcggctccgctcccctacagcgcaggatgaaaccgctg
gcatcctgcctgggcctgtggctcttcttccagttccctgccctggtctctgggacacgt
gtggtctacaaagtgcaggaggaacaaccccccaacaccctcatagggagcctggcctct
gactacggcttcccagatgtgggacatctctacaagctggaagtgggggccccataccta
cgtgtggatggcaagactggggacatctacaccacagagacctccattgaccgggagagc
ttgcgtgactgccagcacctcctgcctggagagccctgctacctggagttcgaagtgtcc
atcactgacctgatcctgaacagcagccctcgcctgctcgaggggcagatagaggtgctc
gatatcaatgacaacacccccaactttgcctcacctgttctcaccctgtccatccccgaa
aacaccaacatcgggacacttttccccatccccctggccatggaccgggactcaggcccc
aatggtgttgcctcctatgagctgacggctggtcctgaagcccaggagctctttgggctg
caggtggcggaggatcaggacgagaagcagccacagctgattgtcatggggaacctggac
cgggagcagtgggactcctatgacctgacgatcaaggtgcaggatggaggcaacccaccg
cgggcgagcagcgccctgcttcgcatcaccatcctggacatgaacgacaacgcacccaag
tttgagaaggccctgtatgaggcagagctctctgaaaacagccccatggggcactctgtc
ctccaggtgaaagccaacgactcagaccagggtgccaatgccgaaattgactattccttc
catcaagcctcagacatggtgcgccggctgctgcgcctggaccgcaccacggggctcatc
accgtacaggggcccatcgaccgtgaggacgtcaacatcctcaagttctctgtcatggcc
aaggacaagggggccaaccccaagagcgcccgcacccaggtggtggtcaccatcaaggac
atgaacgacaatgcaccttccatagagatccggggcatcggactcgtcacccaccaggat
ggcatggcaaacatctcggaggacgtgccagtagagacagcagtagctctggtgcaggtg
tccgaccgagatgagggtgaaaatgccgtggtgacctgtgtggtggctggtgatgtcccg
ttccagctgcggcaggctagtgaaacggggagtgacagcaagaagaaatacttcctacag
accaccacaccgctagactatgagtcggtgaaggagtacaccattgagattgtggcagtg
gactcggggaacccacccctctccagcaccaactctttgaaggtgcaggttgttgacgtg
aatgacaatgcacctgtcttcagccagagtttcactgaggtggccttccccgaaaacaat
gagcctgacgacctggtgatggaggtaagcgccagcgatgctgacagtggctcaaacgcc
aagctggtttactccctggtgacggacccctcttccaagggtgccttcaccattgaccct
gactctggggagatccgggtgaaggcagtgctggaccgagaacagcgggagcgctatgag
ttcttggtggtggcggcagacaagggcagccccagcctcaagggcacagcatctgtggcc
atcaacgtcatggacaggaatgacaacgaccccaagttcatgctgagcggctacaacttc
tcagtgatggagaacatgccgcccctcagccctgtgggcatggtgacagtgatcgatgct
gacaaaggagaaaacgcccgcatccagctgtcggtggagcaagacaacggagattttgtc
atccagaatggcactggcaccatcctctccagcatctcttttgaccgggagcagcagagc
acgtacactttccgactcaaggcagtggatggcggggatcctcccaggtctgcctacgtg
ggggtgaccatcaatgtcttggatgagaatgataatgcccccttcatcacttcaccctcc
aatgccacctacaaacacatcctgccccacaccagccctggccagcaggtgagcaaggtt
aaggcggaggacattgactctggagtcaacgcggagctgacctacagcatcacaggaggc
aaccccttcgagctcttccagatctccccgcacagtggagacatcaccctggagaaggag
atcctgcgcaagcaccatggcctacaccgcttggtagtgcgcgtcaacgacaagggcaag
ccctcacggcacggcacggcgctggtgcacttctacgtcaacgagaccctggccaatcgc
acgctgctggacacgctggtggggcacagcctggacacaccgcttgacatagacatcgct
ggagaccctgaatatgagcgcagcaagcagcgaagcaacatcctcttcggagtcatcgct
ggcatcgtggccgtcactctggtcattgtgctggtcgtcctggtgcgctactgccggcag
cgggaggccaagagcggctaccaggcaggcaagaaggagaccaaggacctgtatgcaccc
aagcaggccagcaagagcggtaagagcaagagcaaggtgaagaagagcaagtccccgaag
ccacccaagcccacggaggatgaggaggagacggggctgcagaaatcgctcaagttcaac
ctcatgaatgactctgtcagtgacagcccccgcatccacctgcctctcaactacccgcca
ggcagcccagacctgggtcgccactaccgctccaactcaccgctgccctccatccagctg
cagcctcagtcgccctctgcctccaagaagcaccaagtggtgcaggacctgccggccacc
aacacctttgttggcaccggggacaacaactcgacaggctccgagcagtactcggactac
agctaccgcaccaatccccagaaatacaccaacaagcagttacctcatcgccgagtgacg
ttctctgcagccagccaggctcaggacctgcaggatccctcccagcacagctactacgac
agcgggctggaggaatcagagaccccaagcagcaaatcatcgtcggggccccgcatcggg
ccgctagccctgcctgaggatcactatgaacgcaccacgcccgatggcagcatcggggag
atggagcaccctgagaacgatctccggcctctgcccgatgtagccatgactgggacctgt
acccgggagtgcacagagttcggccactccgatacctgctggatgcccggccagtcctcc
cccagccgcaggcccaagaacgccctcaaactctccacttttgtgccttaccaagacaga
gggagtcaagagcaagtcgggaatggcagccccagactctcagaagagcgcagcaccaaa
atggccaaccttcgcctgctccccacgtacagtgccttctccaatagtagccatgagccc
tgcaaggactctcctatggaggaaattcctctcacccagacctcggacttccagccagcc
accaccccctcgtcccagaccaccaagagggagatatacctgtga
DBGET
integrated database retrieval system
