Charadrius vociferus (killdeer): 104282929
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Entry
104282929 CDS
T08577
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
104282929 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvf03021
]
104282929 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
cvf03019
]
104282929 (SUPT5H)
Transcription machinery [BR:
cvf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
104282929 (SUPT5H)
RNA polymerase I system
104282929 (SUPT5H)
Messenger RNA biogenesis [BR:
cvf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
104282929 (SUPT5H)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
Spt5-NGN
KOWx_SPT5
CTD
Spt5_N
KOW7_SPT5
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
104282929
NCBI-ProteinID:
XP_009879365
LinkDB
All DBs
Position
Unknown
AA seq
771 aa
AA seq
DB search
EIEASNIDNVVLDEDRSGARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSD
DITQQQLLPGVKDPNLWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKG
YIYVEAYKQTHVKQAIEGVGNLRMGYWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKR
GIYKDDIAQVDYVEPSQNQISLKMIPRIDFDRIKARMSLKDWFAKRKKFKRPPQRLFDAE
KIRSLGGDVASDGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGI
DLEVVTESTGKEREHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEF
PAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSE
TASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRF
AVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHL
VLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSGAGQRGGFGGGGMSRGRGRRDNDLIGQ
TVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSAYGRT
PMYGSQTPMYGSGSRTPMYGSQTPLHDGEWHGGVEGTGSRGPXXXGAWDPNNPNTPSRAD
EDFEYGFDDEPTPSPQGYGGTPNPQTPGYPDPSSPQVNQPYNPQTPGTPAM
NT seq
2318 nt
NT seq
+upstream
nt +downstream
nt
aagagatcgaagcttccaatatcgataacgtggtgctggacgaggatcgctccggcgctc
ggcggctgcagaacctctggagggaccagcgcgaggaggagctgggcgagtattacatga
agaaatacgccaaatcgtcagtgggagagaccgtttacggtggctctgacgagctctcag
acgacatcacgcagcagcagctgctgcctggagtcaaggaccccaatctctggactgtga
agtgcaagatcggcgaggagcgcgccacggccatcgccctcatgcggaaattcatcgctt
accagttcaccgacacgcccctgcagatcaagtcggtggtggcccccgagcacgtcaagg
gttacatctacgtggaggcctacaagcagacgcacgtcaagcaggcgatcgagggggtgg
gcaacctgcggatgggctactggaaccagcagatggtccccatcaaggagatgactgacg
tcctcaaagtggtgaaggaggtcaccaacctcaagcccaaatcttgggtgcgcctcaaga
gggggatctacaaggacgacatcgcccaggtggattacgtggagccaagtcagaaccaga
tctccctcaagatgatcccccgcatcgactttgaccggatcaaagcccgcatgagcctga
aagactggttcgccaagaggaagaagttcaagcgacccccgcagcggctttttgacgccg
agaagatccggtccctgggaggcgatgtggcatccgacggggactttctcatcttcgaag
gcaaccgctacagccgcaagggattcctcttcaagagcttcgccatgtcggccgtgataa
cggagggggtgaagcccaccctgtcggagctggagaagtttgaggaccagcccgaaggca
tcgacctggaggtggtgacagagagcacggggaaggaacgagagcacaacttccagcctg
gcgacaacgtggaggtgtgcgagggcgagctgatcaacctgcagggcaaaatcctcagcg
tcgatggcaacaagatcaccatcatgcccaaacacgaggacttgaaggacatgctggagt
tcccggctcaggagttgcggaagtatttcaagatgggtgaccacgtcaaggtgatcgcgg
ggcgtttcgagggcgacacggggctgatcgtgagggtggaggaaaacttcgtcatcctct
tctctgacctcaccatgcacgagctcaaggttctgccgcgggacctgcagctctgctcag
agacagcgtccggtgtggatgtggggggacagcacgaatggggtgaactggtgcagttgg
acccccaaaccgtgggtgtcatcgtccgcttggagcgggagaccttccaggtgctgaaca
tgtatgggaaagtggtgacggtgcggcaccaggctgtcaccaggaagaaagacaatcgct
ttgccgtcgccctcgactcggagcagaacaacatccatgtcaaggacatcgtcaaagtca
tcgatgggcctcactcgggccgcgaaggggagatccggcaccttttccggggctttgcct
tcctacactgcaagaaactggtggagaacggcggcatgttcgtttgcaagacccgacacc
tcgtcctggcgggcggctccaagccacgggacgtcaccaacttcaccgtgggcggcttcg
cccccatgagcccccgtatcagcagcccgatgcaccccagtggggctggccaacgtggcg
gtttcggcggcggcggcatgagtcgcggccgcgggcggcgggataacgacctcatcgggc
agacggtgcgcatctcccaaggaccctacaaaggctacatcggggtggtgaaggacgcga
cggagtcgacagcccgcgtggagctgcactccacctgccagaccatctcagtggaccgcc
agcgcctgaccaccgtaggttcacggcgcccaggcgggatgacgtcggcgtacgggcgca
cccccatgtacggctcccagacccccatgtacggctctggctcccgcacccccatgtacg
gctcacagacccccctgcacgacggtgagtggcacgggggggtggaggggacagggagta
ggggaccnnnnnnnnncggggcctgggaccccaacaaccccaacacgccctccagggccg
acgaggacttcgagtatggcttcgatgacgagcccacgccctcgccgcagggctacgggg
gcacccccaacccgcagacccccggctaccccgacccctcgtccccccaggtcaaccagc
cctacaacccccagacccccggcacgccggccatgtga
DBGET
integrated database retrieval system
