Charadrius vociferus (killdeer): 104283009 Help Entry 104283009         CDS       T08577                                  Symbol SPG11 Name (RefSeq) spatacsin   KO K19026   spatacsin Organism cvf  Charadrius vociferus (killdeer) Brite KEGG Orthology (KO) [BR:cvf00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:cvf03400]     104283009 (SPG11) DNA repair and recombination proteins [BR:cvf03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      104283009 (SPG11) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Spatacsin_C Borrelia_orfA UBR4 Motif Other DBs NCBI-GeneID:  104283009 NCBI-ProteinID:  XP_009879453 LinkDB All DBs Position Unknown AA seq 2057 aa AA seqDB search MVAFVPRAVTWAPPKPVQSDGTNRSDTRQQWKQIPIEAPQEVVKLECKLVTGVKALFVVL TNDKGLTLALWDFESQDVTYYHFGKNSVYVDCSEEVPLCLLLTEHGLSLVLFGLTQEEFL NRLMIYGSAGVVDSVCHLNGWERCSIPIHALEAGLENRQLDTVDLFLKSKERLFSLSAPC SGPEQSTESASQSYLKNLEELRPALDLLCSAIRENDMEPQSKHFSEQLLNLTLTFLSGQL EEIFVHTEEPDKFLRKGADILTDYIIKLRKFLRKYPRPQISTVHTGSDLDEDLPALEESH MWEKLTPEEVIAEAILSNKMPEAQTFFRMHQHPAQSFQEFIQTGLNLVYDRLLKDNTREA SELLRNMGFDVKEELHKICFYTVDKHVRDLLVKVLREENYFSEKEKKMIDFVHQVESYYS EPFQENKEIQSLSSFKNWRKEQDSSRHTAVLDSLLNCERRRVHNRRVRVMFNWAQWWDEL IQEMILLPRKPLQELKTCNPAVLWMHLTAQHDWLNICSWIEESEPSRPLCEQANWPPLTP DIIDRNMLCSSYMRNDILNKLARNGIFVRSELEDFELLLQRLSYLGGVLQNPHPVPKYSA ANGLDFHARFVLHCLEHNLQYLLYTYLDYYSLTPSNCPILDNKELHEAHPWFEFLVQCRG VASNPRDPKMIFQASLANAQILIPSNQASVSSMLLEGRTLLALATTMYAPGGIDQVLQNE DMEKPLKKVDPQLLKMALTPYPKLKAALFPPCTSHGVLPPDISLYHLVQSLVPFDPTKLF GWQSTNTLAVSDASSDFPHFSSPELVNKYAIMERLDFLYYLHHGRPSFAFGTFLVQQLVK SKSPKQLIQQAGKEACILALSFFSVPSVGAACVCFLELLGLDSLKLRVDIKVANMIFSYR TRNEESQHNQIKESLVEKLTKLADGEKAAAAAVLISLEEAFWDAVEHQGIKKTSSDSRRQ WSLVMQFCKLHNIALSTSYLKECAKANDWLQFIIQTQLYSYRPDEVVSILQDFTPVIQDH LMLALEKLPFLCADTGSPENSAASVFKSKCADSLFQILFQCQGNSNPSRYLLTEGLREQA PVLSVLAACFQDANIIHCLCVWIITTVDAATRAEATNHIQSSAEHYEWDLHDLSLIWKVF LRKQKSKTLLHGFRLFLKDSPLLYVLEMYELCMNCKKYDEAKIKLDKFQESLTKLKTEDE PAASELPVQWLESQALFLLELMMQQCNTEYELGKLLQLFAAADNLLLDGPYVKKLCALSE TLKDSSVSINRSILTSYSMETFQSECRSVLEELQEKGAFSLAREVAALAELPVDNIVTQE VLRDLHHLRDIGQWHQNQTRIEFWKKCNDNFMKNSISSKAASEFFFNQANAVCESSAHEK INSIMERHLLLTLAGHWLAKNDSSSLPRLEEIEKQIWICRIARQTLSTDEGSGTLRFSSQ VVVNRDLTFDSLAKEFAFSKLPALNTPKYLKLEGLAFRESQQTLTDDEEESLKFLIGCLL DEGSVHEASRVCQYFHFYNRDVSLVLHCRALASGEADLDKLHPDIQTLLVAREKTSESGA SQQSRVPSTSSLEDWTHIVAPPPGDEVVISLKALIDECVHGRNYCRQILCLYELSKELNC SYSEMSAHDPEKVLRAILSSRQPDRCRKAQAFITTQGLQPETVAELVAEEIKQELLASSE GKGQKQVLNPAAESQAFLQLAKLCQDHTLVGMKLLDKISSVPRGELSCITELLILAHNCF SLTCHMEGITRVLQAARLLTDEHLAPNEEYGLVVRLLTGIGRYNEMTYIFELLHEKHYFE VLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGENHEAAARIQLKLI ESQPWEESLQDVANLKKLLMKALTLFIDAAESYSKDSCVRQSLRCSRLTKLITLQLHFLN TGQSTMLINLNRQNLMDSIMSLPRFYQAAIVAEAYEFVPDWAEVLYQQVIAKGDFTYLEE FKQQRPLKPSMFEEIAKKVKQHPPTDAALKNLKKLLAYCEDIYTYYRLAYDNKFYDVVNT LLKDAQTGCCLNDMLSN NT seq 6174 nt NT seq  +upstreamnt  +downstreamnt atggtggcttttgttccacgggctgttacgtgggcccctcccaaaccggtacaaagcgat ggtacaaaccgcagtgatacaagacagcaatggaaacaaatccccatagaagcaccacaa gaagtggtgaaactggagtgtaaattggtaactggagttaaagccctgtttgtggtgcta acaaatgacaaaggattgactcttgctctctgggactttgagtcgcaagatgtgacatat taccacttcggcaaaaatagtgtgtatgtggattgcagtgaagaggtgccgttatgtcta cttctgacagagcatggtctctccttagttctatttggtttaactcaagaggagtttttg aatagattgatgatctatggcagcgctggagttgtagattctgtttgtcatctcaatgga tgggaacgatgttcaattccgatacatgcgcttgaggcaggtttggaaaatcgtcaacta gacacagtagacttatttttaaaaagcaaagaaaggcttttcagtctgtctgcaccctgc tctggacctgaacagtctactgagagtgcatcccagtcttacctgaaaaatttggaagag ctgaggccagctctagacttgctttgctcagcaatcagagaaaatgatatggagcctcag agtaaacacttttctgagcagctgctaaacctcacgttgactttccttagtgggcaactt gaagaaatttttgtgcacacagaggaacccgataaattcctgcggaagggtgcagatatt ttaactgattacattattaaacttagaaaatttctaagaaaataccctcgaccacaaata agtacagtacacacaggaagtgatcttgatgaagacctgcctgcgttagaagaaagccac atgtgggaaaaactgacaccagaggaagtcatcgctgaggccatcttaagcaacaaaatg ccagaggcccagaccttcttccgaatgcatcagcatcctgctcaaagttttcaagaattt attcagacaggtttgaatctggtctatgaccgtcttctgaaggataataccagagaggcc tcagaacttttacgaaatatgggctttgatgtgaaggaggaattgcataagatatgtttc tacacagttgataaacatgtacgagatttgttggtgaaagttttacgagaagaaaattat ttttctgaaaaagagaagaaaatgatagactttgtgcatcaggttgaaagctattactcg gaacccttccaagaaaataaagagattcaatctctttccagtttcaagaactggagaaag gagcaagactcttccagacatacagctgtcctagactccttactgaattgtgagagacgt cgggttcacaataggagagtcagagtgatgtttaactgggctcagtggtgggatgagctt attcaggaaatgattcttctccccagaaaaccactccaagagctcaagacatgtaatcct gcggttctttggatgcacttgacagcccagcatgattggcttaatatttgttcctggatt gaagaatctgagcccagccggcctttgtgtgaacaagctaactggcccccacttactcca gacattattgaccggaacatgttgtgtagtagctatatgagaaatgatatattaaacaag ctggctagaaatggaatttttgttcgttctgagttggaagattttgaacttctgctccaa agactgtcttaccttgggggagtattgcaaaatcctcaccctgttccaaaatacagtgct gcaaatggtttggacttccatgctcgttttgtccttcactgtttagaacataatttgcag tatctgctatacacttatttagactattacagtttaactccttcaaattgccctattttg gataacaaggaattgcatgaagcgcatccctggtttgaattccttgtgcagtgtcgaggg gttgccagtaacccacgagatccaaagatgatttttcaagctagtctagcaaatgctcag atcttgattcctagtaatcaagccagtgtgagcagcatgctgctggaagggcgtacgcta ttggcacttgctactaccatgtatgcacctggaggtattgatcaggttcttcagaatgaa gatatggaaaaaccgctaaagaaggtcgatccacagctcttaaaaatggcattgactcct taccccaaactcaaagctgctctctttcccccgtgtacttctcatggagttttgccccct gacatctctctttaccatcttgttcagtcattagtgccctttgatcccactaaactattt ggctggcagtcaacaaatactcttgctgtatcagatgcatcaagtgactttcctcatttt tcatcccctgaactggtgaacaaatatgctataatggaacgactggattttttgtactat ttgcaccatggacgtccatcatttgcttttggtacatttttggtccagcagttagtaaag agcaaatcccccaaacagttgattcagcaagcaggaaaggaagcctgcattttagctctt tctttcttcagcgtaccttcagtaggagcagcctgtgtgtgttttctagagttgcttggt ctcgacagcctcaaactcagagtcgatattaaagttgcgaacatgattttcagttacaga actagaaatgaagaatctcagcacaatcaaataaaagaatctttggttgaaaagttaaca aaattggctgatggtgaaaaagcagcagcagcagcagttcttatctccctagaagaagcc ttttgggatgcagttgagcatcaaggaataaagaagacgtctagtgactctaggaggcag tggtctttggtaatgcagttctgtaaactgcataatatcgcattgagtacatcttaccta aaggaatgtgccaaagccaacgactggctgcagttcatcatccagacccagctgtacagc taccggccagacgaggtcgtttctatccttcaagatttcactcccgttatacaagatcac ttgatgttggcgttggagaagttaccgtttttgtgtgctgatacggggagtcctgaaaac agtgctgccagcgtgttcaagagcaaatgtgcagatagtctctttcaaatcctctttcaa tgtcaggggaactccaacccttcgcgttaccttttgactgaaggactgagagagcaggct cccgttctgagtgttttagcagcatgtttccaagatgcaaacattattcactgtctctgc gtttggataattactactgtggatgctgctaccagagctgaagcaacaaaccatattcaa agctcagcagaacattatgagtgggatcttcatgacctatcacttatctggaaagtcttt ttaagaaagcaaaaaagtaaaacacttctacatggcttccggctctttttaaaggattcc cctttactgtatgtactggagatgtatgaactatgtatgaactgtaaaaaatacgatgaa gctaaaatcaaactggacaagtttcaggaaagtctcacaaaacttaaaactgaagatgaa ccagcagcttcagaattacctgtgcaatggttggaatcccaggcattgtttcttcttgaa ttgatgatgcagcaatgtaacacggaatatgaattaggaaagctcttacagctgtttgct gcagcagataatcttctactcgatggcccttacgtgaagaaactctgtgcactcagtgag accctgaaggattcctccgtatcaattaatcgctccatcctaaccagttacagtatggag acatttcagagtgagtgcaggtcagttctggaggagttacaggagaaaggagcgttctcc ctggctcgggaggtagcagcactagccgaattgcccgtggacaacatagttacccaagag gttctaagagatctacatcatttaagagacattggacagtggcatcaaaaccagacaaga attgaattctggaaaaaatgtaatgacaacttcatgaaaaattcaatctccagcaaagct gcatctgaattctttttcaatcaggcaaacgcagtctgtgaatcttcagctcatgagaag ataaacagcattatggagagacatttgttgcttaccctagctggccattggctagccaag aatgactcatcgtcactccccaggttagaagaaatagaaaagcagatctggatttgtcgc atcgcacgacaaacgttatccacagatgaggggtcaggcacgttgagattttcctcccag gttgtcgtgaacagggatcttacctttgatagcttagctaaggagtttgctttttcaaag ctccctgctctgaacacaccaaagtacttaaaactagaaggtcttgcattcagagagtct caacagaccttgactgacgatgaggaggaatcactcaagtttctgatcggatgccttctg gatgaaggaagtgtgcacgaagccagccgtgtttgtcagtatttccatttctacaacaga gacgtttcactggtattgcactgcagagctctggcttcaggggaggctgatctagacaaa ttacacccagatattcagactcttcttgtagcgagagagaagacatctgaaagcggcgca tctcagcaaagcagagtcccaagcacgtcaagcttagaagactggacacacattgtggct ccacctccaggtgatgaggtcgttatcagtctgaaggctctcatagatgaatgtgtccat gggaggaactactgcagacagattctctgtttatatgaactttctaaggaattgaactgc tcctacagtgaaatgtcagcccacgaccctgagaaagtgcttcgagcaattctgtcgtcc cgtcagccggacagatgcaggaaagctcaggctttcatcaccacgcaggggctccagcct gaaactgtggcagagctggtggctgaagaaatcaagcaggaattattggcatcttcagaa gggaaaggacagaaacaggttttgaaccctgcagctgagagtcaggcattcctacagctc gctaagctgtgccaggatcataccttggttggcatgaagttattggacaaaatttcctct gtaccacgtggggaactgtcatgcattacagaattgctgattttggcccataactgcttt agtttgacttgccacatggaaggaatcacgagagtcctccaagcagcacggcttctcaca gatgaacatttggcgcccaatgaagagtacggactcgtggttcgtcttctcactggaatt ggaagatacaatgaaatgacctacatatttgaactgctgcatgagaaacactactttgaa gtgctcatgagaaagaaattagacccaagcgggacactgaagacagctctgctggattac atcaagcgttgtcgcccaggggacagtgagaagcacaacatgatagccctttgcttcagc atgtgtcgagaaattggagagaatcatgaggctgctgctcgcatacagcttaaactcatc gagtctcagccgtgggaggagtcccttcaggatgttgcaaatttaaagaaactgctgatg aaagctctgactctctttattgatgcagcagaaagctattctaaggactcctgcgtccgc cagtccttgcgctgcagtcggctaacaaagctgataaccctccagctgcattttctcaac accgggcagagcactatgctcatcaacctgaacagacagaacctgatggactccatcatg tccttgcctagattctatcaggcggctattgtggctgaggcttacgagtttgttccagat tgggctgaagttctgtatcaacaagtgattgctaagggagacttcacttacttagaagaa tttaaacaacaaagaccactgaagcccagcatgttcgaggagattgctaagaaagtcaaa caacacccacctactgatgctgctctgaaaaatctgaagaagttgctcgcttactgcgaa gatatctacacatactacagactcgcttacgataacaagttctacgatgtggtaaatacg cttctgaaggatgcacagactggctgttgccttaacgatatgttatcaaactag

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