Charadrius vociferus (killdeer): 104283277
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Entry
104283277 CDS
T08577
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104283277 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvf03019
]
104283277 (PATL1)
Messenger RNA biogenesis [BR:
cvf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104283277 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
104283277 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
104283277
NCBI-ProteinID:
XP_009879735
LinkDB
All DBs
Position
Unknown
AA seq
748 aa
AA seq
DB search
MGDAGRASYIQPRWRSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAH
ERLGGRLTRLVIDSELEDPAIMQAVQTRVPAQVGPGGLNSSIWDSSAVLRRIRGPLLTQE
MPSVSVLDYALPQRPPQARDEERDPSERALPRRSSSPVIGSPPVRAVPIGTPPKQAAVPN
FNQQILCPKPVHIRATMQQRYPAPYGERMSPNQLCNVPNSSLLGHPFPHSVSPVLTHLQR
AQLLGGAQVKPGRMSPSQFARVSGLVGSPLPSVNPKLLQGRVGQMMSPASGFRAFFGAPP
APPPSQPQHPPGPGSHLQSLRPQPQMFRPDTTHLHPQHRRLLHQRQQQNRNQHRSLNGSV
GDRGGHRSSHQEQIRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDYYYQNYFQKLEK
LSAAEEVHGDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGKLTVSSVNNPRKMIDAVVT
SRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYLLSLEGERPALMGERKQKI
CDMYDNLRGKAPGQERPSDDHFMQIMCIRKGKRLVARILPFLSPEQAADVLMATARNLPF
LIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQLTNLPQSATAPAPTNLHLTAVLQN
KFGLSLLYLVLSRGEELQSSDANTELMQDNQWTELMLMATRELLRIPQAALAKPVSTPSN
LISLFSRYVDQQKLNLLETKLHLVHGIR
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgggggatgccggccgggcctcctacatccagccgaggtggcggtccctggaggactgc
ccgctggatgaggatgaagacgctttccaggccctgggggaggaagatgaagatatcgac
cagttcaacgatgacacgtttggagccggggctgtcgatgacgactggcaggaggcacac
gagcggctgggggggcggctgaccaggctggtcatcgacagcgagttggaggaccccgcc
atcatgcaggctgtgcagaccagggtccctgcgcaggtgggacctggagggctgaactcc
agcatctgggacagctcggccgtcctgcggcgcatccgggggccgcttctcactcaggag
atgccgtcggtatccgtgctggactacgctctgcctcagagacccccacaggctcgagat
gaagagcgggacccctccgagcgggcactgccccggcgttcgtcgtcccctgtcattggg
agcccccctgtccgggctgtccccatcggcacccctcccaagcaggctgctgtgcccaac
ttcaaccagcagatcctgtgtccgaagcctgtccacatccgagctaccatgcagcagcgc
taccccgctccctacggcgagaggatgtcccccaaccagctctgcaacgtaccgaattcc
tccctcctgggccacccgttccctcacagcgtctctcccgtcctcacccacctgcagaga
gcgcagctgctcggaggagcccaggtaaagcccggccgaatgtcccccagccagtttgcc
cgtgtctctggtctggttgggagccccctcccctccgtcaatcccaagctgctccagggc
agagtcgggcagatgatgtctccggccagcgggtttcgtgccttctttggggctcccccc
gctccacctccctcgcagccgcagcacccgccgggccccggatcccacctgcagagcctg
aggccacagccccagatgttccgaccggacacgacccacctgcaccctcagcatcgccgg
ctcctgcaccagcgacagcagcagaaccgaaaccagcaccggagcctcaatggctcggtg
ggggaccgagggggccaccggagcagccaccaggagcagatacgcaaagacccctacgct
aacctcatgctgcagcgggagaaggactgggtgtccaagatccagatgatgcagctgcag
agcactgatccctacctggatgactattattaccagaattacttccagaagctggagaag
ttgtcagcagcggaagaagtccacggtgatggtcccaagaaggaacgcactaaactcatc
acgcctcaggtggctaagctggagcacacctacaagccagtgcagtttgagggctcgctc
gggaagctcaccgtctccagcgtgaacaacccccggaagatgatcgacgcggtggtgacc
tcccgcagcgaggatgacgagacgaaggagaagcaggttcgagacaagaggcgccagacc
cttgtcacgatcgagaagacgtacagcctcctcctggacgtggaggactacgagagacgc
tacctcctgagcctggaaggcgagcggccagccctgatgggcgagaggaagcagaagatc
tgtgatatgtatgacaatctgagggggaaggcacccgggcaggagaggccaagcgacgac
cacttcatgcagatcatgtgcatccggaaagggaagcgcctggtggcccggatcctcccc
ttcttgtcacccgaacaagcggccgacgtactcatggcgacagccaggaacctgcccttc
ctcatcaagaaggatgctcaggacgaggtgctgccctgcctgttgaggcccttctcgcac
gttctctaccaccttcccttggggacggtcaccagccttgtgcagcagctaacgaaccta
cctcagagcgcgaccgcgccagcgcccaccaacctgcacctcactgctgtgctccaaaac
aagttcggcctgtccctgctgtacttggtcttgagccgcggggaggaactgcagagctcg
gacgcgaacacagagctaatgcaggacaaccagtggacggagctgatgctcatggcgacc
cgggagctcctgcggatccctcaggcggccttggccaagccggtctccaccccttccaac
ctgatctccctcttctctcgctatgtcgaccagcagaagctgaacctgctggaaacaaaa
ttgcacttagtgcacgggatccggtag
DBGET
integrated database retrieval system
