Charadrius vociferus (killdeer): 104283722
Help
Entry
104283722 CDS
T08577
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
104283722 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cvf04121
]
104283722 (SLX4)
03400 DNA repair and recombination proteins [BR:
cvf03400
]
104283722 (SLX4)
Ubiquitin system [BR:
cvf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
104283722 (SLX4)
DNA repair and recombination proteins [BR:
cvf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
104283722 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
zf-met
B129_C2H2-zf
Zn-C2H2_12
Zf-C2H2_ZNF451_C
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
104283722
NCBI-ProteinID:
XP_009880242
LinkDB
All DBs
Position
Unknown
AA seq
1764 aa
AA seq
DB search
MDEQDSDFKELWANLLGRAKKKAGDAEAAKRAQNRSKTTAAKSKLRRGKAAAKSQTHHHL
PAAKATNLSQDWGPKEQTLVHKEDGGAVACSSGETAQGDGKRTPFPASQLGTVAGECSQR
TLTVNTLSGCSQATLSFHPATQPGTCSSPTSKIPPLAGSKMRVAELVVERMQQFKRVAPE
QLKHSADNSLPKSVASRDFSDESQEQNPPENDTHHLPSMEHDGALALALQXXXXXXXXXX
XXXXXQETKEEALASLEDVGLFFCQICQKDLSAMNTTRREQHVNRCLDEMEEAQMSSSNK
PLVPECPICGKQFQTPQSRVSHLKRCAVEMDVPPKLLLQAVQLQVSTLGDAPLQCPSNQP
SRSKRKGSSKEDSKKMQKRAKMETKDEDLLVAMAMSRSLLEQEKQEQAKSVTNVKPVAAL
PIKWKPGSEKKRRKRGPTAPPPLLLQDPEKARKRIQDRVAMLLAEEVEFPPTPQLPTSRI
LEDESGKATWLLPLSKTKECFLWNISALTGPCDPESFYTAELTPPIVPWKPVQSSLRLLA
EDFSAMVNNPHLSDVQFQVDSGEVLYAHMFVLYARCPQAVQFVHSEGFLVEEDGNAQTRR
VLLSDVMGEAVCAFLGCLYAADADIPAGLLPQVGALAARFGVRELVAKCENNAGESQVSS
GADSEDDLISVRDEKDCEDRAENFQDLLKSVWVGEDEEEVALLNAECQKEDDNAVGEQEL
EEIYEFAATQRKMAQGETEVSEGTDCSICSDTEAAQGTNQQTEEEEVERSESASISNNFK
DLRDDNDVERPKCDSSAEEKMQNINRCKSVNAAQTTFVPHHGEPQKWDVASHGATANEGE
TVRRCEDVKDSKSSQVSHDGTDYCEKQFSGSNGDTINESYEHLFSATQGDYFEPSPVKEV
IRESGKDPSEKHVDVNDSLLYSKSQKDLSPHRNGFYRTPPPKPYVPLFPAVGSSPASPKS
ERKFAGEHVATPKQNRKETSFPSDDIPFQKANELDTASRNNNLISPAELPSVDLNKQTYV
PVLSPPVIRAQDAAAQGDKEGDVIVLSSDDEMELQQNKKSPESVFALKEMEIPGQLKCTN
IEQGPEIPRPEPNSSVTETEQRSTQVSCALTDTVHISNDVKIPTELPLSKADACTESKRS
PNLSPQKGLSHEMSSGTDSSWLVPDTPVLSKSRSFSTQTEVTSINLLKSSGSKLNTKNLA
AGTRNHEMAGNLIEIRETTLSDKHLPMETSVSERTPSSSPAAGSLSKNSPPVSPVDSVFV
SPGHTNIKSKCAKISFLSKPVPPCHQQSLEEKANSSVVEVEDSEKEVSLPSVSSSVLLCD
EPPVPVDDCWQVEYLSPVTGNSQDSNHVSRAKTSTASSAKPDSWHDQWESPAHAQEIKGS
TPLRGSPVSRRRTLLCLEKSPIEACSPVGSRPSYLNSKIWDDWNGQEEEDEFPEMLPLSQ
RLSAAAGACRTDPVKTPEPSCQENDKTPSTPMTPMPAYSMMETPQLKKELSRFGVRALPK
RQMVLKLKEIFQYTHQDGDSDFEDEIPSSQPPQRKSPAKRSRQSKVDQTAGGKRANASRA
VGRRKQVAVASSVLPVGSADDELVGSRETACAAPKEGTKMTHHPEGAKEQKRSSVSPERW
SLAADGEEPVLSASQESAVSSVDGSDISFGSQSSFMNGFEACAFASEEEEEELPASQAAA
REEEKLEAVRCYIRSNTALYRRILFYEPIELADLHTELKQNGIKISKAKLLDFLDAHCIT
FTTARARKEKEQKRKGNKKQRKRY
NT seq
5295 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacaggacagtgattttaaagagttgtgggcaaatcttttgggtagagcaaag
aaaaaagctggggatgctgaggcagcaaagagagctcagaacaggtcaaagaccactgca
gcaaaaagcaaattaagaagaggcaaagctgctgcaaagagccaaacccatcatcactta
ccagcagcgaaggcaacaaacttgtctcaagattggggtccaaaggaacaaacgttggtg
cacaaagaagatggtggcgctgtggcctgtagtagtggtgagacggcacaaggggatgga
aagagaacccctttccctgccagccagctgggcacagtggctggtgagtgtagccagagg
accctgacagtaaatactctgagtggctgttcccaggctacattatccttccaccctgct
acgcagccagggacctgctcttcacccacctcaaagataccgccgctcgcagggtcgaag
atgcgggtagcagagctggtagtggagaggatgcagcagttcaagagagtagcacctgaa
cagctgaagcacagcgcagacaatagcttgccaaagtctgtagccagcagggatttctct
gacgaaagccaggagcagaacccaccagagaatgatacccaccatcttccatccatggag
catgacggcgctctggctttggctcttcagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnngcaggaaaccaaagaggaagccctggcaagcctagaggatgtaggc
ttgtttttttgtcagatctgccagaaggatctctcagccatgaacacaacgcgacgagag
cagcatgttaacaggtgtctggatgagatggaagaagcacagatgtcatcctccaacaaa
ccactggtccctgaatgtcccatctgcgggaagcagttccaaaccccacagagccgagtc
agtcacttgaaacgctgtgctgtcgagatggatgttcctcctaagctgcttcttcaggca
gtgcagttgcaggtgtccacacttggtgatgcacctcttcagtgtcccagcaatcaacca
agcaggtcaaagcgaaaaggctcttccaaagaggactcaaagaaaatgcagaagagggcc
aaaatggagactaaggatgaagatttgctggttgctatggcaatgtcacgctctctgttg
gagcaagaaaagcaggaacaagcaaaatcagttacaaatgtgaaaccagtggctgctttg
ccaatcaaatggaagccaggatcagagaaaaaacgtcgtaaaagaggcccaactgcacct
ccaccattactgcttcaggacccagagaaggcccgcaaaaggatccaagaccgagtagct
atgctgcttgcagaagaggtggaattccctcccacccctcagcttcccactagtaggatt
ttggaggatgaatctgggaaagcaacctggcttttgccattgtccaaaaccaaggagtgc
tttttatggaatatcagtgctttgacgggaccctgtgaccctgaatcattctacactgct
gaattaacccctccaattgtaccttggaagcctgtgcagtcctctctcaggttgctggct
gaagatttcagtgcaatggtcaacaacccccacttaagtgacgtccagttccaggtggac
tctggggaagtcctttatgcccacatgtttgtgttgtacgcacggtgtccgcaggccgtt
cagtttgttcacagcgaagggttcttagtggaggaggatgggaatgcgcagacgcgccgt
gtgctgctgagtgacgtgatgggagaggcggtgtgtgcattcctgggatgcctttatgct
gctgatgctgacatccctgctgggctgctgccccaggtgggggctctggctgccaggttt
ggtgtgagggaactggtggcaaagtgtgaaaacaatgctggagagagtcaggtgtcttct
ggagcggattcagaagatgatcttatctctgtgagggatgaaaaagattgcgaggacaga
gctgagaacttccaagacctcttgaagtcagtgtgggtgggtgaagatgaggaagaagta
gctttgctgaacgctgaatgccagaaggaagatgacaacgcagtgggtgaacaggagctg
gaggaaatctacgagtttgctgcaactcagagaaagatggctcaaggtgaaacagaggtg
agtgagggaacagactgcagcatctgcagtgatactgaggcagcccaaggtacgaaccag
caaacggaggaagaagaggtagagagatctgaatctgcttcaataagcaacaacttcaaa
gatttgagggatgacaatgatgtggaaagacctaaatgtgactcgtctgcagaagagaaa
atgcagaatataaataggtgcaagagtgtgaatgctgcacagaccacttttgttcctcac
cacggtgaacctcaaaaatgggacgtagcatcccatggtgccaccgctaatgaaggagag
actgtgaggagatgtgaagatgtgaaggattccaagtcatctcaggtctcacatgatggg
acagattactgtgaaaaacagttttctggctccaacggtgatactataaatgaaagctat
gaacacttgttttctgcaactcagggggattactttgagccttccccagtgaaagaagtt
atcagagaatcgggaaaagatcctagtgaaaaacatgttgatgttaatgattcacttttg
tacagcaagtcacaaaaagacctctctccacataggaacgggttttacaggactccgcct
cccaaaccttatgtgcccctttttcctgctgttggctcttcacctgcatctccaaaatca
gagagaaagtttgccggagaacatgtggcgacaccaaagcaaaacagaaaggaaacatca
ttcccatctgatgacataccctttcagaaagccaatgagctggatactgcatcaagaaac
aacaacttaatttctccagcagagcttcccagtgttgatttaaacaagcagacgtatgtc
ccagtgttgtcaccaccagtcatcagagctcaggatgctgcagctcagggggacaaggaa
ggtgatgttattgttttatcttctgatgatgaaatggagttacaacaaaataagaagtcg
ccagagtcagtcttcgctctgaaggaaatggaaatccctgggcaactgaaatgtacaaac
atagagcaaggtcccgagatacccagacctgaacctaactcctcagtcactgaaacagag
cagagatcaacccaggtctcatgtgcccttacagatacagtgcatataagtaatgatgta
aagatacccactgaattgcctctcagcaaagcagatgcttgtacagagagcaaacggagt
ccaaacctgagccctcaaaaagggctcagtcatgaaatgtcttcaggtacagacagctcc
tggctagtgccagacacaccagttctgagcaaaagcagaagtttctcaacacagactgag
gtcacaagtattaatttgttaaagagttcaggatctaaactcaatacaaagaacttagca
gcaggtactagaaaccatgaaatggctggaaatttaatagaaattcgtgaaacaacattg
tcagacaaacatttgcctatggagacctcggtcagtgaaaggaccccttccagcagccca
gcagcaggatcattgtccaagaactccccaccggtttctccagtggattcagttttcgtc
tcccctggccacaccaacataaaaagcaaatgtgccaagatctcgtttttatccaaacct
gtgcctccatgccaccagcagtcattggaagagaaagcaaacagcagtgtggttgaggtg
gaagacagtgaaaaggaagtaagtctgccttctgtgagtagtagcgtcttgctttgtgac
gagcccccagtccccgttgatgactgctggcaagttgaatatctgtcgccagtcacaggt
aacagccaggactccaaccacgtcagccgtgcaaagaccagcactgccagcagcgccaaa
ccagactcttggcatgaccagtgggagagcccagcccacgcgcaggaaattaagggcagt
acccctcttcgaggcagtcctgttagcagaagaagaactttgctctgtcttgaaaagagt
cctattgaggcatgttcaccagtgggcagtagaccaagttacctgaactccaaaatctgg
gatgattggaatggacaagaggaggaagatgaatttccagagatgcttcctctgtctcag
aggttgtcagctgcagcaggtgcctgtcggacggatcctgtaaagactcctgaaccttct
tgtcaggagaatgacaagactcccagcactccgatgacaccaatgccagcttactccatg
atggagaccccacagctgaagaaggagctgagcagatttggagttcgtgctctcccaaaa
cgccagatggtgttgaagctgaaggagatattccagtatactcaccaggacggggactct
gactttgaggatgaaatcccatcttcccagcctccccagcggaagtccccggccaaacgc
tctaggcagtcaaaggtggaccagactgcaggcggaaagcgtgccaatgcctccagggct
gtgggcaggaggaagcaggtagctgtcgcttcttcagtgctccctgtggggagtgctgat
gatgagcttgttggatcccgtgaaacagcctgtgcagcacccaaggagggaactaaaatg
acacatcacccagaaggagccaaagagcagaaaaggtcatctgtatctccagagagatgg
tctctggcagctgatggtgaggaaccagtactctcagcatctcaggagtctgcagtttct
tcagtggatggaagcgacatctcttttggttcacagagttctttcatgaatggatttgaa
gcctgtgcttttgcatctgaggaggaggaagaggagcttccagcatctcaggcagcagct
cgggaagaagaaaagctggaggcagtaaggtgctacatccgttcaaacacagccctctac
cgcaggattctcttttatgagccaattgagctggctgacctgcacacagagctgaaacag
aacggcattaaaatttccaaggcaaagctgctggactttttagatgctcactgtatcacg
tttaccacagccagagcccggaaggagaaggaacagaaaaggaaggggaacaaaaaacag
aggaaacgatactga
DBGET
integrated database retrieval system
