Charadrius vociferus (killdeer): 104283774
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Entry
104283774 CDS
T08577
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cvf
Charadrius vociferus (killdeer)
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cvf03016
]
104283774 (RTCB)
Enzymes [BR:
cvf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
104283774 (RTCB)
Transfer RNA biogenesis [BR:
cvf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104283774 (RTCB)
Prokaryotic type
tRNA splicing ligases
104283774 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
104283774
NCBI-ProteinID:
XP_009880293
LinkDB
All DBs
Position
Unknown
AA seq
488 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMCAGGFLPAMKQIGN
VAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNL
DESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKE
HCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNEYAARKMGIDHK
GQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASAEGQDYLKGMA
AAGNSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGS
TRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRA
KSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISKKAIKL
RPIAVIKG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgccgaacatgcatgtggaaggcgttttctacgtgaacgac
cccctggagaagctgatgtgtgcgggcggctttttgcctgctatgaaacagattgggaat
gtggctgcattacctggtattgttcatagatcaataggccttccagatgtccattctggc
tatgggtttgccataggcaacatggctgcctttgatatgaatgatcccgaggcagtggtg
tcaccaggtggtgtcggatttgacatcaactgtggtgttcgcttactgcgtacaaatttg
gatgaaagtgatgtgcagcctgtgaaagagcagctcgcccaggctatgtttgaccacatt
cctgttggtgttggctccaaaggtgtcatccctatgaatgccaaggatttggaagaggcg
ctggagatgggtgtggactggtctctccgggaaggctatgcctgggcagaggacaaggag
cactgtgaggaatatggaagaatgctgcaggctgaccccaacaaggtctcctcaagagca
aagaagaggggcctgcctcagctggggaccctgggagccggaaatcattatgccgagatc
caggttgtggatgacatttacaacgaatatgctgccaggaagatgggcatcgaccataaa
gggcaggtgtgcgtgatgatccacagtggcagcagaggcctgggccaccaagttgccaca
gatgctttggtggctatggaaaaggctatgaaacgggacaaaatcatagtgaatgatcgc
cagctggcatgtgccaggattgcctctgcagagggacaggattacttgaagggaatggca
gctgctggaaactcttctatgacttttctaacaagacaggcctttgccaaagtcttcaac
acaaccccagatgaccttgatatgcacgttatctatgatgtgtctcacaacattgccaaa
gtggagcaacatgtagtggatggaaaggagcggactctgctggtgcacagaaaggggtca
accagagccttccctcctcaccatcctcttatcgctgtcgattatcaactgactgggcag
cctgttttgatcggcgggactatgggcacctgtagctatgttcttactggcacagagcaa
ggcatgactgagaccttcggaactacttgccatggagctggtcgtgcactgtctcgagcc
aaatctcgacgtaacctggacttccaggatgtattggacaagctggctgacatgggcatt
gccatccgtgttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaac
gtgacagatgtggttaacacatgccacgcagctggcatcagtaagaaagccattaaactg
agacctattgctgttataaaaggctag
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integrated database retrieval system
