Charadrius vociferus (killdeer): 104284046
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Entry
104284046 CDS
T08577
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104284046 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvf03019
]
104284046 (HBS1L)
Messenger RNA biogenesis [BR:
cvf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
104284046 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
GIP1_N
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
104284046
NCBI-ProteinID:
XP_009880628
LinkDB
All DBs
Position
Unknown
AA seq
710 aa
AA seq
DB search
MQVNAGIRGIAGLEDVEATKSVRAGAQQGALIGPVNTDFEDDDVYGQSVEDDYCISPSTA
AQFIYSRRDKPATFAEPLEEEYGYEGTDDTADYFTSNHQLTEVDRARLNSCLDQMREVLA
ESVPEQTMVQAVLDSKFDVQKALDLVLSQGSKQNVKTKNEDAVIVGKTTKGKTRDSQSAR
MESEIVPKVTKMTVSGKKQSMGFEVPCVIAEENGHANTPHKGLLPEDASVASGVLEAVSK
STLSSQVVQISEEQHTMPTPVKKSSKAKPQIDVKAELEKRQGGKQLLNLVVIGHVDAGKS
TLMGHLLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFE
TKTKVITLMDAPGHKDFIPNMITGAAQADVAILVVEASRGEFEAGFETGGQTREHGLLVR
SLGVTQLAVAVNKMDQVNWQQERFQEITSKLGQFLKQAGFKESDVAYIPTSGLGGENLVT
RGQSSDLTQWYKGKCLLEQIDSFKPPQRSVDKPFRLCVADVFKDQGSGFCVTGKIEAGYI
QVGERLLAMPPNETCTAKGITLHDEPVDWAAAGDHVSLTLTGMDIIKINVGCVFCDPKEP
IKVCTRFRARVLIFNIEVPITKGFPVLLHYQTVSEPATIRRLLSVLHKSTGEVTKKKPKF
LTKGQNALIELQTQRPVALELYKDFKELGRFMLRYSGSTIAAGVVTEIKE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtgaatgcaggtatccggggaattgctgggctggaggatgtagaagcaactaag
tctgtcagagctggagctcagcagggagcactgatagggcctgtgaacacggattttgaa
gatgatgatgtctatggccaatcagtagaagatgattattgcatttctccttcaacagca
gctcagtttatctactccagacgagacaaaccagcgacatttgctgagccactagaagaa
gaatatggctacgaaggtacagatgatactgccgattattttacatccaatcatcagttg
actgaagttgatagagcccgtcttaattcatgccttgatcaaatgagagaagttttggca
gagtctgtaccagagcaaacaatggtgcaagcagtactggatagtaaatttgatgtacag
aaggctttggatcttgtgctttcacaaggcagtaagcaaaatgtgaagaccaagaatgag
gacgctgtgattgtaggaaagacgacaaaaggaaaaacaagggattcccagtcagccaga
atggaatctgaaattgtgccaaaagttaccaaaatgacagtgtctggaaagaaacaatct
atgggatttgaagttccatgtgtgattgctgaagaaaacggccatgctaacacacctcac
aaaggactgttacctgaagatgccagtgtggcttctggggtacttgaggcagtctcaaaa
tctactctttcatcccaagtagtgcagatttcagaagaacagcatacaatgcctactcca
gtaaaaaagtcaagcaaggcaaaaccgcaaatagatgtgaaagcagaattggagaagaga
caaggaggaaagcaactgcttaatttagtggtaataggacatgttgatgcaggtaaaagt
actttaatgggtcatctgctctaccttttgggaaatgtgaacaaaagaactatgcacaaa
tacgaacaggaatctaagaaggctggcaaagcgtcgtttgcctatgcctgggtcttggat
gaaactggtgaagaaagagaaaggggagtgacaatggatgtgggtatgaccaaattcgag
acaaagactaaagtaattacactgatggatgctccaggccacaaagacttcattccaaat
atgatcacaggagctgcacaggctgatgtggctattttggttgtggaagctagcagagga
gagtttgaagcagggtttgagacaggtggacaaactcgagaacatggattattagtgcgc
tctcttggagtgacacagctagctgttgcagtcaataaaatggatcaggtcaattggcaa
caggaaagatttcaggaaattacgagtaagctcggccaatttcttaaacaagctggcttt
aaggaatcagatgtggcttatatcccaacgagtggccttgggggtgaaaatctggtcaca
aggggtcagtcaagtgacctcacacagtggtataaaggaaagtgtttgttagagcaaatt
gattctttcaagccaccacagagatcagtggataaaccatttaggttgtgtgttgctgat
gtttttaaagaccaaggatcaggattttgtgtgactggtaaaatagaagcaggctatatt
caagttggagaaagacttctggcaatgcctcccaatgaaacttgcactgcaaaaggaatc
acactgcatgatgaaccagttgattgggctgcagcaggagatcacgttagtctcactttg
accggcatggatatcatcaaaatcaatgttggctgtgtattttgtgatcccaaggaaccc
attaaagtttgcactcgtttcagagctcgggttctcatcttcaatatcgaggttccaatc
actaaaggatttcctgtgcttttacactatcaaactgtaagtgagcctgcaactattaga
agactgttgagtgtcctgcacaaaagcactggtgaagtgacaaagaaaaaacctaagttc
ttgactaaaggacagaatgctctaatagaactacagactcaaagacctgttgctctagag
ttgtataaagattttaaagagcttgggaggtttatgttacgctacagtggttccactatt
gctgcaggagttgtcacagagattaaagaatga
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