Charadrius vociferus (killdeer): 104284869
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Entry
104284869 CDS
T08577
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104284869 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvf03019
]
104284869 (CNOT1)
Messenger RNA biogenesis [BR:
cvf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104284869 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104284869 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
104284869
NCBI-ProteinID:
XP_009881548
LinkDB
All DBs
Position
Unknown
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLVAYVKGHQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELE
QHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGTPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcaatttctgatccaggagtgtgcgtcg
ctgatcacaaaaccaaactttatctcgacgctgtcctacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtctcgctttactgaactctttcagctcagat
ctacgaggttttgctgcccagtttatcaaacagaaactcccagatcttttgcgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcctttggggtaggacag
gaacaaattgacgctttcctcaaaacattacgtagagattttccccaggaacgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtacaagtgtcgaagaatgtcgcaacataatcatgcaattc
ggtgttcgggaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cattcggggttgacggatggtattccattacaatctatttcggctcctggcagtgggatt
tggagtgacgggaaagataaaagtgatggagcacaagcccatacctggaatgtggaggtc
ttaatcgatgttcttaaagagctgaatcctagtctggacttcaaagtagtaacctatgaa
ttggaccacccaggatttcagattcgtgacagcaagggcctgcatattgtagtgttcggc
atccagagagggctgggcatggaagttttcccagttaatgccatatacagaccttggaag
catgcagagggccagctctccttcattcaacattccctcataaaccctgacatcttctgt
tttgctgactacccttgtcatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgattgaatctctgttacgattg
gcagaagtgggacagtatgagcaggttaagcagctcttcagttttcctatcaagcattgc
ccagatatgttggtattggccttactgcagatcaacacttcctggcataccttgcgccac
gaactcatctccacactcatgccaattttccttggtaaccatcccaactctgccatcatt
ttgcactatgcgtggcatggacagggtcagtctccttcgattcgtcagcttatcatgcat
gcgatggcagaatggtacatgagaggggagcagtatgaccaggcaaaactgtcacgtatt
cttgatgtggcccaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcctgtatgactttctta
aagagaagatgtccatctatcctgggtggccttgctccagaaaaagatcaacccaaaagt
gctcagcttcctccagaaaccttggcgactatgttggcgtgtctgcaagcttgtgctggg
agcgtttctcaggagctgtcggagacgatcctcaccatggtggctaactgcagtaacgtc
atgaacaaggcgagacagccaccgcctggagtcatgccaaaaggccgcccgcccagtgct
agcagcttggatgccatctctcctgtacagatcgactcgcttgcaggaatggcatctctt
agtttaggtggctcagctgctcctcatacccagagcatgcaaggcttccctccaaacctg
ggctctgcgttcagtactcctcagtcaccagcaaaagcgttcccccctctttccacccaa
aatcaaacaacaggtttcagtggcatcggcggactctcttcgcagcttccagtaggtggt
cttactacgggtagcctgactggcataggaaccggagccctgggccttcctgcggtgaac
aatgacccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggcccgaggctaatcagcacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgcatttacaaccatccgccg
catccgaccatgtctgtagatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaataccgt
ttctttccccagtacccagataaagagctgcacataacagcctgcctctttggtgggata
atagagaaaggactggttacttatatggcattgggccttgccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttccctcatcatttacaggagtacatagaatacggacagcaatcccgagac
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaagttccagcaaaagctcctcttgctggccaagtcagcactatagta
accacctcaaccaccaccactgttgcaaaaaccattacaatcacccgaccaactggagtc
agcttcaagaaagacgtgccgccttccattaatactaccaacattgatacgctgttagta
gcaacagatcaaactgagagaattgtggaacctccagagaatgtccaggaaaaaattgct
ttcatcttcaataatctgtcccagtcaaacatgacacagaaggttgaagaattgaaggaa
acagtgaaagaagagttcatgccttgggtatcacagtatcttgtgatgaagagagtcagt
attgagcctaattttcacagcctatattcaaacttccttgacacacttaagaatccagag
tttaataaaatggttctgaatgaaacctacagaaatatcaaggtgctactgacatcagat
aaagctgcagccaacttctcagaccgttccttgttaaagaaccttggtcactggctggga
atgattacgctggctaaaaataagcccatcttgcacacggatttggatgtgaaatcgcta
ctactggtagcatatgtcaagggacatcaggaattgctttatgtagtgccatttgttgcc
aaagtcttagaatccagtgtcaggagcgtggtcttcaggcctccaaacccgtggacgatg
gccattatgaatgttttagctgagctacatcaagaacatgatctaaaattgaatctgaag
tttgagatcgaggtgctctgcaagaatcttgcactagacatcaatgagctgaaacctgga
agtctcctgaaagataaggatcgtctgaaaaatctggacgagcagctgtctgctccaaag
aaggatgtgaagcaaccagaagaactaccacccatcacaacaactactgcttctacaact
ccagctaccagcaccacttgtacagccacggttcctccacagccccagtacagttatcac
gacatcaacgtctattctttaggagggttggctccacatattaccttaaatccaacgatt
ccgctgtttcaagcccacccgcagctgaagcagtgtgtgcggcaggcgatcgagcgagca
gtgcaagagcttgtccatccggtggttgatcggtccattaagattgccatgactacttgt
gagcagatagtcaggaaggactttgcactggattcagaggagtcacgaatgcgtgtggct
gcgcaccatatgatgcgaaacctgactgctgggatggccatgattacctgcagggaacct
ttgctgatgagcatagctaccaacttgaaaaatagttttgctactgcactgagggcagcc
tccccacaacagagggacatgatggagcaagcagctgcccagttagcgcaggataactgt
gagctggcgtgctgcttcatccagaagacggctgtggaaaaggcaggccctgagatggac
aagaggctcgcaactgaatttgagctcagaaaacacgctagacaagagggccgtcggtac
tgtgatcctgttgtgttaacttaccaggcggagcggatgccagagcagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttatgaagagtttgcacgcaatgtccct
ggcttcctgcctaccaatgacttaactcagcctacaggattcttggcgcagcctatgaag
caagcttgggctacagatgatgtagcacaaatctacgacaaatgtatgacagaactggag
cagcacctgcaatccattccacacaccctggccatgaatcctcaagctcaagcgttgcgt
agcctcttggaggctgtggtagtggctcgtaactcccgtgatgctattgctgcacttgga
ctactgcagaaggctgtagagggcttactggatgcaaccagtggggcagatgctgacctc
ctgctgcgctatcgtgagtgtcatctgcttgtgctgaaggctctgcaggacggccgtgca
tatggaactccatggtgtaataagcaaattactaggtgcctgattgaatgcagagatgag
tacaagtacaacgtggaagccgtggagctgctaatccgcaatcaccttgttaacatgcag
cagtatgacctgcacttggctcagtcaatggagaatggcttgaactacatggctgtggca
tttgccatgcagttggtaaagatcctgttggtggatgagagaagtgtcgcccacgtaaca
gaggcagatctgtttcacacaattgagaccctcatgaggattaacgctcattccagagga
aacgccccagaaggattaccgcagctgatggaagtggtccgatcaaactacgaagcaatg
attgaccgtgctcacggaggtcccaatttcatgatgcattcaggaatttcccaagcctct
gagtacgatgatccaccaggtctgagggagaaggcagaatacctgctgagggagtgggtg
aacctctaccattcagctgcagcgggccgtgacagtaccaaagcgttctctgcgtttgtt
ggacagatgcaccagcaaggaatcctgaaaacagatgacctgatcacccgctttttccgt
ctttgcaccgaaatgtgtgttgaaatcagctatcgtgctcaggctgagcaacagcacaat
cctgctgccaaccccactatgattcgagccaagtgctaccacaatctggatgcctttgtg
cgacttattgcactgctggtgaagcactctggggaggcgaccaacacagttacaaagatc
aacctcctgaataaggttcttggtattgttgtgggagttcttctgcaagaccacgatgtt
cggcaaagtgagtttcagcaacttccttaccatcgcattttcatcatgttgctgttggaa
ttaaatgctcctgagcacgtgctggagaccatcaacttccagacactcacagctttctgt
aacacatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctggaa
ctgatctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaagggt
tggcctatgtatgcccagttactgatcgatcttttcaagtacttggctcctttccttaga
aatgtggaactcaccaaacctatgcaaattctttacaagggtactctgcgtgtgttgctg
gtcttgttgcatgatttcccagaatttctttgtgactaccactatgggttctgtgatgtg
atcccacctaactgtattcagctaaggaatctgatcctgagtgccttcccacggaacatg
aggcttccagacccttttacccccaatctaaaggtggacatgttaagtgagattaatatt
gctccacgaatactcacaaatttcactggagtgatgccacctcagttcaagaaagacttg
gattcctatctcaaaacccgttctccggtcacttttttgtctgacttgcgcagcaaccta
caagtatcaaatgaacctggaaaccgctacaacatccagctgattaacgcactggtgctc
tacgtgggtactcaagctattgcgcacattcacaacaaaggcagcacaccctctatgagc
accattacccactcagctcacatggacatcttccagaatctggcagtagacctggacact
gaaggccggtaccttttcttgaacgcaattgccaaccagctacgctaccccaacagtcac
acccactacttcagctgcaccatgctgtacctgtttgcggaggccaacaccgaggccatc
caggagcagatcactagggttctcttggaacgattgattgtaaataggcctcatccctgg
ggtctccttattactttcatcgagctgataaaaaacccagcgtttaagttctggaaccat
gagtttgttcactgtgctccagaaattgagaagttgttccagtcagttgcacagtgctgc
atggggcagaagcaggcccagcaagtaatggaagggactggtgccagttag
DBGET
integrated database retrieval system
