Charadrius vociferus (killdeer): 104285157
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Entry
104285157 CDS
T08577
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cvf
Charadrius vociferus (killdeer)
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cvf04121
]
104285157 (PDZRN3)
Enzymes [BR:
cvf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104285157 (PDZRN3)
Ubiquitin system [BR:
cvf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
104285157 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
104285157
NCBI-ProteinID:
XP_009881869
LinkDB
All DBs
Position
Unknown
AA seq
784 aa
AA seq
DB search
MGCSLCTLQKQEEQYKLLYEVCQVNGKDLSKATHEQAVEAFKTAKEPIVVQVLRRTPRTK
VFAPPHESQLVDVGTQTDITFEHIMALSKMGSPTPPVSVLDPYLLPEDCYILHPSVHEYY
DPNDYMGGIHQEMDRDELELEEVDLHRVNSQDKLGLTVCYRTDDEDDMGIYVSEIDPNSI
AAKDGRLREGDRIIQINGIEVQNREEAVALLSSEESKNISLLVARPEIQLDEGWMDDDRN
DFLDDLHMDMLEEQHHQAMQFTASMLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDDS
TRNDESSEQENNVDDHTTSSNTLGSQKKLTYSHDTLGSGDMQFSNESFISADCTDVDFLG
IPVDECERFRELLELKCQVKSANPYSLYYHNSTLDMSKSDQESVDRELEMLNEELRSIEL
ECLNIVRAHKMQQLKDQYREPWMLHNSGFRNYNTSIDVRRHELSDITELPEKSDKDSSSA
YNTGESCRSTPLTLEISPDNSLRRTAEGINCQGNEGAVAYNVSQKNLFASSESHESSPGK
CHASAKDPDLGKQLESKERKASDGSKSPTHGQKPSGSYVSPYHHSPYKHAHIPAHAQHYQ
SYMQLIQQKSAVEYAQSQMSLVSMCKDFNSSPSEPRMEWKVKVRSDGTRYITKRPVRDRL
LRERAIKIKEERSGMTTDDDAISEMKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLDC
LKEQQGAEDKKEMNIIELSHKKMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLS
VTTV
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgggatgcagtttgtgcactctgcagaagcaggaggaacagtacaagttactgtacgaa
gtttgtcaggtcaatgggaaggatttatctaaagcaacacatgagcaggcagtggaagca
ttcaaaacggccaaggagcccattgtggtgcaggtcctgagaagaactccacgcaccaag
gtcttcgctccacctcacgagtctcagctggtagatgtgggcacgcagacagatatcact
tttgaacacatcatggctctaagcaagatgggctcacctactccacccgtctctgtgcta
gacccgtatctcctacctgaagactgctacattctccatccatcagtgcatgaatactat
gacccaaatgactacatgggaggaattcatcaagaaatggaccgagacgagttggaactg
gaggaagtagatttacatagagtgaacagtcaggacaagcttggccttactgtgtgttac
agaacggatgatgaagacgacatgggtatttatgtgagtgagattgatcccaacagtatt
gctgcaaaagacggtcgactccgagagggggatcgcattattcagatcaatggcatagag
gtgcagaaccgagaagaagctgtggcacttctcagcagtgaagagagcaagaatatctcc
ttactggttgcaagaccagaaattcagctggatgaaggatggatggatgatgacagaaat
gattttctggatgacttgcacatggacatgttagaggaacagcaccaccaggcaatgcaa
tttactgccagcatgcttcagcagaagaagcatgaggaggatggaggtaccacagataca
gccactattttatctaaccagcacgagaaggacagtggcgtggggcgcacagacgacagc
actcgcaacgacgagagctccgagcaggagaacaacgtggatgatcacaccacctcctcc
aacactttaggaagccagaagaagctgacgtacagtcatgacaccttaggcagtggcgat
atgcagttcagcaatgagtcgtttatctcggccgactgcacagacgtcgacttccttggc
atccccgtagatgaatgcgagcgattccgggaactgctggaactgaagtgccaggtgaag
tctgccaacccctacagtctgtactatcacaacagcacgctggatatgagcaaaagtgac
caagaaagtgttgacagagagctggagatgctgaatgaggagctgcgcagtatcgagttg
gagtgcctgaatattgtgagagcccataaaatgcagcagctgaaagatcagtaccgggag
ccctggatgctacacaacagcgggttccgcaactataacacaagcatcgatgttcgcagg
cacgagctctcagacatcacggagctccccgagaagtctgacaaggatagctcgagtgcg
tataacacaggggaaagctgtcgaagcacaccactcacgctggagatttcccctgacaat
tcgctacgcagaactgcggaaggcattaactgtcaaggtaatgagggggcagtggcatac
aatgtctcccaaaagaatttatttgctagctcagaaagtcatgaatccagccctggtaaa
tgccatgcctctgctaaagatcccgaccttggcaagcagctggaaagcaaggagagaaaa
gccagtgatggaagcaaaagccctactcatggccaaaaaccttccggttcctacgtctcc
ccgtaccatcactctccatataagcatgctcacattcctgcccacgcacagcactaccag
agctacatgcagctgatccaacagaaatcggcggtggagtatgcacagagccaaatgagt
ctggtgagtatgtgcaaagacttcaattcaagcccgagcgaacccaggatggagtggaaa
gtgaaggtcagaagcgatgggacccgctacattacaaagaggccggtgagggacaggctg
ctgagagaacgtgccataaagattaaggaggagcgcagtggtatgactaccgatgatgat
gccataagcgaaatgaagatgggtcgttactggagcaaggaggagcggaagcagcattta
gtgaaagcgaaggagcagaggaggaggcgcgagtttatgatgcagagcaggttagattgc
ttaaaggaacagcaaggtgcggaagacaagaaagagatgaatatcattgaactgagccac
aaaaaaatgatgaagaagagaaataaaaaaatatttgacaattggatgacaatccaagaa
ctgctaacccacggaacaaagtcaccagacggcacacgggtgtacaattccttcctgtca
gtgactactgtataa
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integrated database retrieval system
