Charadrius vociferus (killdeer): 104285386
Help
Entry
104285386 CDS
T08577
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104285386 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvf03041
]
104285386 (DDX42)
Enzymes [BR:
cvf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104285386 (DDX42)
Spliceosome [BR:
cvf03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104285386 (DDX42)
Complex B
104285386 (DDX42)
Complex C
U2 SnRNP specific factors
104285386 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
104285386
NCBI-ProteinID:
XP_009882142
LinkDB
All DBs
Position
Unknown
AA seq
927 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPDSPIAAAAAAKGVPGFTSTGNLSSVPT
FPSVGVQGFNNTNASTNNREGSGGCGGGSERYNDNRNSRHNEVPRRGEGGGRYNDVQRHG
EGGGRHSDAYRHGEGRHGDSHRHGESRHFTDVGSGNRNNGDSRNSNEGRNNENRNGENRK
DANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctgggactaagagaggctttgggtttggtggatttgcc
ataacacctgggaaaaaagaggagcctaagctctctcaacagtctcatagtgcttttgga
acagccggttcttctgctgcatttgcgaaatcaggacctcctcagctgccttctttctac
aaaattgggtcaaagcgagcaaattttgatgaagagaatgcgtactttgaggatgaagag
gaagattccagcaatgttgaattgccgtacattcccgcagagaattcccccactcgccag
cagtttcattccaaatcagcagactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagacttgaagataaagacaaagaa
aaaaagaatgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggctgaaaaccccactgctggtgtggtccaagaagaggaagaggataac
ctggagtatgatagtgatgggaatccaattgcaccatccaaaaaaatcattgatcctctt
ccacctattgaccattcagagatcgaatatccaccgtttgagaaaaatttctatgatgag
catgaagagatcaccagtctcaccccgcagcaagtggtggagttacgtcataagctaaat
ctccgggtctccggtgctgctcctccaaggcctgggagtagttttgctcattttgggttt
gatgagcaacttatgcatcaaattaggaaatcggagtatactcagcccactcctatacag
tgtcagggtgttccagttgcactaagtggcagagatatgattggcatagctaagactgga
agtggaaaaacagcagccttcatctggcccatgttgattcacatcatggatcaaaaggag
cttgagccgggggatggtcccattgcagtgatcgtgtgcccaaccagagagctttgccaa
cagatccattctgaatgtaaacgctttggtaaggcatataatctgcgctccgtagctgtg
tatggaggaggaagcatgtgggagcaagccaaagccctccaggagggggcagagatagtt
gtctgcacaccaggtcgtttaattgatcatgtgaaaaagaaagctacaaaccttcaacga
gtcacttaccttgtgtttgatgaagctgacagaatgtttgatatgggttttgagtaccag
gtcagatcaattgcaagccacgtacgtcctgacagacagaccctcttgttcagtgccact
ttccgtaagaagattgagaaattggcccgagatattctgatcgacccaattcgagttgtg
cagggagacattggagaggcaaatgaagatgttactcaaatcgtggagattttcccctct
ggccccagcaaatggaactggctgactcgacgcctcgtcgagttcacatcttctgggagc
gtcctcctttttgtcaccaagaaggcaaacgcagaagagctggccaataaccttaagcag
gaggatcataatctggggctgcttcatggtgacatggaccagagtgagaggaataaagtc
atttcagaatttaagaaaaaggggatcccaatactggtagctactgatgtggcagctcgt
gggttagatattccttccattaagactgtcatcaattacgatgtggctcgggacatagac
acgcacacccatagaattggtcgtactggcagagcaggcgagaagggagttgcctacact
ctgctgactcccaaagacagtaacttcgctggtgatcttgtcagaaatctggaaggcgct
aatcaacatgtttccaaagagctgttggatctagcgatgcagaatccatggttccggaaa
tcacgtttcaaaggaggaaaaggcaagaagctgaatattggtggtggtggcttaggatac
cgtgaacgtcctggtctggggtcagaaaattctgaccgtggaaacaacaacagtgtgatg
agtaactatgaggcgtacaagccatccactggggcaatgggagacagacttacggcaatg
aaagcagcttttcagtcccagtataagagccactttgttgctgcaagcttaaataatcaa
aagactggtagctccgctgctggtgctagtggctggaccagcgctgggagcttgaactcg
gtaccaacgagttccgcacagcaaaatgctgcaaatcctgacagcccgattgcagccgcc
gcagcagcaaagggtgttccgggtttcaccagcacagggaatttgagtagtgttcccact
tttccgagtgtcggagtacagggcttcaacaacacaaatgccagcaccaacaatcgagaa
ggcagtggtggctgtggtggtggcagtgaacgatacaacgacaaccggaacagtcgccac
aatgaggtcccgcgccgtggagagggtggtggtcgctacaatgatgtgcaacgccatgga
gaaggaggcggtcgccacagtgacgcttaccgccacggagagggccgacacggtgacagc
catcgccatggcgaaagccggcacttcactgatgtgggcagtggcaatcgcaataatggt
gatagcaggaatagcaatgaaggtaggaacaacgagaacaggaatggtgagaacaggaag
gatgccaacagccgagacaacaagacagatggttttgctgtcccagagcccccaaaacgt
aagaagagccggtgggacagttaa
DBGET
integrated database retrieval system
