Charadrius vociferus (killdeer): 104285483
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Entry
104285483 CDS
T08577
Symbol
DROSHA
Name
(RefSeq) ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104285483 (DROSHA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvf03019
]
104285483 (DROSHA)
03009 Ribosome biogenesis [BR:
cvf03009
]
104285483 (DROSHA)
03036 Chromosome and associated proteins [BR:
cvf03036
]
104285483 (DROSHA)
Enzymes [BR:
cvf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
104285483 (DROSHA)
Messenger RNA biogenesis [BR:
cvf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
104285483 (DROSHA)
Ribosome biogenesis [BR:
cvf03009
]
Eukaryotic type
90S particles
RNase
104285483 (DROSHA)
Prokaryotic type
rRNA processing factors
104285483 (DROSHA)
Chromosome and associated proteins [BR:
cvf03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
104285483 (DROSHA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helical_CED_Drosha
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
DSRM_MRPL44
YcaO
Cro
5_3_exonuc
Motif
Other DBs
NCBI-GeneID:
104285483
NCBI-ProteinID:
XP_009882249
LinkDB
All DBs
Position
Unknown
AA seq
1332 aa
AA seq
DB search
MSFHSGRGCPRGQGGPGTRTSTQTYRPQNLRQLHPQQPSVQYQYDQQTAPPTTYSNPPTT
SYMPPRPDFVPYPPPVPPSTQNPISQCPMRPPFPNHQMRQSFPVPPCFPPAPPPVPNPSN
APVPGTPAGQSTFPYMMPPPTVPHPPPPPVIPQQVSYQPVYSTGYSQQSFPPPNFNSYQH
NSGSFQSSATNSSGFRHTGQYQGEKSQSDRRSPERSKHYDEHRHREHGHIHGDRHRSTNH
GDRRDRGRSPDRRRQESSRHRTDYDRGRISPHHRSYERSRERERERHRHRDSRRSPSPDR
SYKKDYKRAGSRSPSRERKRPRWEEDRERWSENQSSSKEKNYTTIKDKESEENASEKNED
EDEELLKPVWVRCTHSESYYSNDPMDQVGDSTVVGTSKLRDLYEKFDDELGKRQAKAKAA
RPPWEPPKTKLDEDLESSSDSDCDSEDDSSCSSSSDSEVFDVIAEIKRKKAHPDRLHEEL
WYNDPGQMNDGPLCKCSAKARRTGIRHGIYPGEEPIKPCRPMTNNAGRLYHYRITVSPPT
NFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCV
RGLELFSSYLFKDILELYDWNLKGPSLENDSVCCPRFHFMPRFVRFLPDGGKEVLSMHQI
LLYLLRCNKALVPEEEIANMLQWEELEWQKYAEECKGMIVTSPGMKPSSVRIDQLDREQF
NPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQADKQKLSQRE
EALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHVRYHQCLMHLDKL
IGYTFRDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI
NTLINIMSRLGQDDPAPSRINHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTA
IVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQ
LFGRLLFNDKDLRDVWLNYPLHPLQLQESNTDRQLIETSPVLQKLTEFEEAIGVIFTHVR
LLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLV
NNRTQAKVAEELGMQEFAITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYVHTFMN
VCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAV
YFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQKRFIERKYRQELKEMRWEREHQ
EREPDETEEARK
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccattctgggcgaggatgtccccgtggtcaggggggaccaggaacaagaact
tcaacacagacgtaccgccctcagaacctacgtcagcttcacccacaacagccctctgta
caataccagtatgaccagcaaactgcccctccaacaacctattcaaaccctccaaccacc
agttacatgcctcccaggccagactttgtgccctatcctcctccagtgccaccttccaca
caaaatcccattagccagtgtcccatgaggccaccatttccaaaccaccagatgaggcag
agcttcccggtccctccatgcttccctcctgctcctccgcctgtgccaaatcctagcaac
gctcctgtgccaggaactcctgctgggcaaagcaccttcccttatatgatgcctcctccc
acagtaccgcatcctccacccccaccggtcataccacagcaagtcagctaccagcctgtg
tactccacggggtattcacagcagtcattcccaccacctaacttcaatagctatcagcac
aactctggctcctttcagagcagcgctactaacagcagtggctttcggcacacgggtcag
tatcagggagagaagtcacaaagtgatcggcggtctccagagaggagcaagcactacgat
gagcaccgacatcgtgaacacggtcacatccatggtgacaggcatcggtccactaaccat
ggagatcgccgggatcgaggccggagtccggacaggaggaggcaggaaagcagtcggcac
cggacagattatgacagaggaaggatatcacctcatcacagaagttatgagcgcagcagg
gagcgggagagggagaggcataggcatcgtgacagcagaagatcaccatcaccagacaga
tcctacaaaaaagattacaagagagcaggaagccgatctccaagtagagagagaaagaga
ccccgatgggaggaggacagagaaaggtggtctgagaaccagagctccagcaaagagaaa
aactataccactatcaaagacaaagaatcagaggagaatgcatctgaaaaaaatgaagac
gaagatgaggaattacttaagccagtgtgggttcgctgtacccactctgaaagctattat
tccaatgaccctatggatcaagtgggggactctactgtggtaggaacaagcaagctccga
gatctatatgaaaagtttgatgatgagttgggaaagcgacaggcaaaggccaaagcagcc
agaccaccgtgggagccaccaaagaccaagctggatgaagatttagagagctccagtgac
tcggactgtgactctgaagatgacagcagctgctctagcagttcagattcggaagttttt
gacgtcattgcagaaattaagcgtaaaaaagcacaccctgatcgtctccatgaagaactg
tggtacaatgatccaggacagatgaatgatggacctttgtgcaagtgcagtgctaaagca
cgacgaacgggaataagacatggcatttatcctggcgaagagcccattaaaccatgccgc
cccatgaccaacaatgctggaagactataccactatcgaattactgtgtcgcctcccaca
aacttcttaacagacagacctactgttattgagtatgatgaccatgaatatatctttgaa
gggttctccatgtttgcacatgccccactaacaaacattcctctatgtaaagtaatcaga
tttaacattgactatacaattcattttattgaggagatgatgcctgagaatttttgtgtg
agaggtcttgagctattctcttcatatctattcaaagatattttggaactctatgactgg
aatcttaaaggtccttcacttgaaaatgattctgtttgctgccccagatttcacttcatg
ccacgatttgtgagatttcttccagatggaggaaaagaagtactctcgatgcatcagatt
cttctctacttgttacgatgcaataaagctctggtccctgaagaggagattgccaacatg
cttcagtgggaagaactggaatggcagaaatatgcagaggaatgcaaagggatgattgtt
accagccctggcatgaaacccagctcagttcgtattgatcaactggaccgtgaacagttc
aatcccgatgtaattactttccccattattgtccatttcgggatacggcctgctcaactc
agttatgctggagatcctcaataccaaaagctgtggaagagttatgtgaagctgcgtcac
ctgctggctaatagtcccaaagtcaagcaggctgataaacagaaattatcacaaagagag
gaagcactgcagaaaattcgtcagaagaacacaatgagacgtgaagtgaccgtcgagttg
agtagccagggattctggaaaacagggatacgctctgacgtctgccagcatgcaatgatg
cttcctgtcctcacccaccacgtccgctaccatcagtgcctgatgcatttggacaaactg
ataggctacacttttcgagataggtgcttgcttcagcttgccatgactcatccaagccat
cacttaaactttggaatgaacccggatcatgccagaaattccttatccaactgtgggatt
cgccagccaaagtatggcgatagaaaagttcaccatatgcacatgagaaaaaaagggata
aacaccctgataaacattatgtcccgtttgggacaggacgatccagctccttccaggatt
aaccacaacgagcgtttagaatttctgggagatgctgtggtggagttcttaacgagtgtc
cacttgtactacctgtttcccactctagaggaaggaggattagctacgtaccgtactgcc
atcgtacagaaccaacacctggccatgttggctaagaagctggaactagatcgatttatg
ctttatgctcatggtccagacctttgcagggaatcagatctccgccatgcaatggccaac
tgctttgaagccctaataggagctgtttatctagaggggagcctagaggaagcgaaacaa
ttatttggacgtttactcttcaatgacaaggacctgcgggatgtatggcttaattatccg
ctacacccactccaactgcaggagtccaatactgacaggcaactcattgagacctctccc
gttcttcaaaagcttacagagtttgaggaggcaatcggagtcatctttactcatgttcgg
cttctggcacgtgcgttcactctgaggacagtaggctttaaccatctgactctaggccac
aaccagaggatggaattcctgggtgactccataatgcagttggtagccacagagtattta
ttcatacatttccccgatcatcatgaagggcacttaacgctgttgagaagttctttggtg
aacaacagaacacaggccaaggtggcagaagagctgggtatgcaagaatttgccatcact
aatgacaagacaaaaagacctgtagctcttcgaacgaagactttggctgatctcttggaa
tcctttattgctgccctgtacattgataaagatttggaatatgttcacactttcatgaat
gtatgcttttttccacggctaaaggagtttattttaaatcaagattggaatgatcctaaa
tctcagcttcaacagtgctgcttgactctcaggacagaaggaaaagagccagacattcct
ctttacaagactttgcagacagtgggaccatctcatgccaggacatacacagtagctgtt
tacttcaaaggggaaagaataggatgcggtaaaggcccaagtattcagcaagcggaaatg
ggagctgctatggatgcgcttgaaaaatataactttccccagatggcccatcagaaacgg
ttcattgaacggaagtacagacaagagttgaaagaaatgaggtgggaaagagagcatcaa
gagagagagccagatgagactgaagaagcaaggaaataa
DBGET
integrated database retrieval system
