KEGG   Charadrius vociferus (killdeer): 104285934
Entry
104285934         CDS       T08577                                 
Symbol
HLTF
Name
(RefSeq) helicase-like transcription factor
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
cvf  Charadrius vociferus (killdeer)
Brite
KEGG Orthology (KO) [BR:cvf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cvf04121]
    104285934 (HLTF)
   03400 DNA repair and recombination proteins [BR:cvf03400]
    104285934 (HLTF)
Enzymes [BR:cvf01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     104285934 (HLTF)
Ubiquitin system [BR:cvf04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    104285934 (HLTF)
DNA repair and recombination proteins [BR:cvf03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    104285934 (HLTF)
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-C3HC4_3 zf-RING_5 zf-RING_2 DEAD zf-ANAPC11 RING_XB3-XBAT31 ResIII zf-C3HC4_4 zf-rbx1 Prok-RING_4 HDA2-3 zf-Nse zf-RING_6 zf-RING_4
Other DBs
NCBI-GeneID: 104285934
NCBI-ProteinID: XP_009882765
LinkDB
Position
Unknown
AA seq 982 aa
MAAGQLPLARPLGARSKACQAAFVLSENGVPIMLDSARGWSQHNICRGVRKYSRFLSSDF
YSSLGLEDFLSVGDTSGTEEDTDSAVLYGTLRGSVVGLRYYTGIVNNNEMVALQREPNNP
YDKNAVKVNNVNGDQVGHIKKELAAALAGILDNKLALIEGVVPYGAKNAFTMPVQMSFWG
REENKEAVLDQLKRHGFKLAPPLKGSECGFGSKWISGRAGPSYSAPIHAAVQLTTEQLKS
EFDKLFEDLKEDDKSCEMEGAEAVGTLLLPHQKQALAWMVSRENSDDLPPFWEERSDFYY
NVLTNFAEKQRPKNVLGGILADDMGLGKTLTTIALILTNFQDGKPLPVEKITSDKCYEES
GTNSMNSVGRRLCEDSSNVMVPGVSNIKKFETTPLKYASCLPKRDKAKKPRYSGSSDLGE
SEEGLLQQTESTASVQSAEKYYSDVGPRATLIVCPLSVLSNWIDQFEQHIRQDFHVSIYV
YYGSDRSKDPSVLSEQDIVLTTYNILATDYGIRGDSPLHKVKWLRIVLDEGHTIRNPNAQ
QTKAALNLEGHRRWVLTGTPIQNSVKDLWSLISFLKLKPFTDREWWHRTIQRPVTMGSPG
GLGRLQSLIRIITLRRTKTSKVKGKPILELPERKVFIQYVTFTEEERQIYQFVKKEGKAA
ISRFFSEGTVLAHYADVLGVLLRLRQLCCHRRLCINTSSSSFSADNKTTEELHEALVNKM
KLVLSSGSDEECAVCLESLTLPVITRCAHVFCKPCIFEVIRSEQPNAKCPLCRNELRVEH
LVECPLEEEIDSSNGKKSDQQWISSSKINALMHALIELRRDNPTAKCLVVSQFTTFLSLI
ENPLKESGFAFTRLDGSMAQKKRVEAIQCFQSSQAGSPTVMLLSLKAGGVGLNLTAASRV
FLMDPAWNPAAEDQCFDRCHRLGQKHNVVITKFIVKDSVEENMLKIQNKKRELAAGAFAT
KKPSASEAKQTKINEIKALIDL
NT seq 2949 nt   +upstreamnt  +downstreamnt
atggcggccggtcagctcccgctggcccggccgctgggagctcgcagcaaagcctgtcag
gccgcgttcgttctgtcagaaaacggggtgccgattatgctagattctgcaagaggatgg
tctcaacataacatctgcagaggagtgagaaagtattcccgttttttatcttctgacttt
tactccagtcttggattagaagacttcctctctgtaggtgacacttctggaacagaggag
gatacagactcagctgtcttatatgggactttgagaggaagtgttgttggattacggtat
tacacggggattgttaataacaatgaaatggttgcacttcagagggagcccaataatcct
tatgataaaaatgcagtgaaagtaaataatgtgaacggagaccaggtaggccatataaaa
aaagaattagcagcagcattggcaggcattttggacaacaaactggcattaattgaaggg
gttgtcccttatggagcaaaaaatgcctttaccatgcctgttcaaatgagcttttgggga
agggaagagaacaaagaagcagtgctagatcagctaaaaaggcacggatttaaattggct
cctcctctgaaaggttcagaatgtggttttggatcaaagtggatttctgggagagctggt
ccaagttacagcgctccgattcatgctgctgtgcagttgacaactgaacagcttaaaagt
gaatttgacaaattgtttgaggatctgaaggaagacgataaaagttgtgaaatggaagga
gcagaggctgttggcacactcttgcttccccatcagaagcaggccttagcttggatggtt
tcacgtgagaacagtgatgatttgccaccattttgggaagagagaagtgacttctattac
aatgtactcacaaattttgcagaaaagcagcgacccaaaaatgttcttggaggaatactg
gctgatgacatgggactgggtaaaacacttactactattgcattgattctcacaaatttt
caagatggcaagcctcttcctgttgaaaagatcacaagtgacaagtgttatgaggagtct
ggtactaacagcatgaacagcgttggacgcagactatgtgaagactctagcaatgtgatg
gttcctggtgtttctaacataaaaaagtttgaaactactccgttgaaatacgcaagttgt
cttccaaaaagagataaagccaagaaaccgagatattcaggaagcagtgacttgggagag
tctgaagaagggttgctgcagcaaacagaaagtaccgctagcgttcaatcagctgagaag
tactactctgatgttggccccagagcaacactgattgtatgtccactgtctgtcctaagc
aactggattgaccagtttgaacaacatatccgccaagattttcatgtaagtatttacgtt
tattatggttctgaccggagcaaggacccatcagttctttcggaacaagacattgtattg
acaacatacaacatcttagctactgattatggaatcagaggcgacagccctttacacaaa
gtcaagtggctgagaattgtgttggatgaggggcacacgatacgaaatccaaatgctcag
caaactaaagctgccttaaatctggagggacacagaagatgggtacttacaggcactcct
attcagaattctgtaaaggatttgtggtctcttatttccttcttaaaactgaaacctttt
actgatcgagagtggtggcacagaacaattcaacgtccagtcacaatgggatctccagga
ggacttgggcgtttacagtctctgattaggattattacccttagaagaactaaaacaagt
aaagttaaaggaaaacccattttggagttaccagagcgtaaagtatttattcagtatgtt
acgtttacagaggaagagagacaaatctatcagtttgtgaagaaggagggcaaagctgct
attagcagatttttcagtgaagggactgtgctagctcactatgctgatgtccttggtgtc
ctgctcagattgaggcagctttgttgtcatcgtcgtctttgtataaatacatcttcctcc
agtttttcggctgataataaaactactgaagaactgcatgaggctttagtgaataaaatg
aagttggttctgagctctggttcagatgaagaatgtgcagtttgcttggaatcactgact
cttcctgtaataacacgctgtgcacatgtgttttgtaagccatgtatttttgaagtcatc
agaagtgagcagccaaatgccaaatgccctctctgtaggaacgagcttcgagtagagcac
ttggtggaatgtcccctagaagaggaaatagactccagtaatggaaagaaatctgatcag
cagtggatatccagttcaaagataaatgctctcatgcatgctttgatagaactgcggagg
gataatccaactgctaaatgtctggttgtttctcagttcacaactttcctgtcactgata
gaaaatcccttgaaagaatcagggtttgcctttactcgtttggatgggtcaatggcacag
aagaaaagagtagaagcaattcagtgtttccaaagcagccaagcaggatccccaactgta
atgcttttgtctctgaaagcaggtggagttggattaaatctgacagcagcttcccgagtg
tttttaatggatcctgcttggaatcccgctgcagaagaccagtgttttgacaggtgtcac
aggctgggtcagaagcataacgttgttattactaagttcattgtgaaggattcggtggaa
gaaaatatgctgaaaattcagaacaagaagagggaacttgcagcaggagcttttgctacc
aaaaagccttcagcaagtgaagcaaaacaaaccaaaattaatgaaatcaaggctctaatt
gatttatag

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