KEGG   Charadrius vociferus (killdeer): 104286406
Entry
104286406         CDS       T08577                                 
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
cvf  Charadrius vociferus (killdeer)
Pathway
cvf03030  DNA replication
cvf03410  Base excision repair
cvf03420  Nucleotide excision repair
cvf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cvf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104286406 (RFC1)
   03410 Base excision repair
    104286406 (RFC1)
   03420 Nucleotide excision repair
    104286406 (RFC1)
   03430 Mismatch repair
    104286406 (RFC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cvf03032]
    104286406 (RFC1)
   03400 DNA repair and recombination proteins [BR:cvf03400]
    104286406 (RFC1)
DNA replication proteins [BR:cvf03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    104286406 (RFC1)
DNA repair and recombination proteins [BR:cvf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     104286406 (RFC1)
SSDB
Motif
Pfam: RFC1 BRCT AAA PTCB-BRCT AAA_14 AAA_22 Rad17 BRCT_2 AAA_5 AAA_30 RuvB_N AAA_18 RNA_helicase AAA_17 AAA_16 AAA_7 AAA_33 nSTAND3 AAA_19 NTPase_1 NPHP3_N
Other DBs
NCBI-GeneID: 104286406
NCBI-ProteinID: XP_009883300
LinkDB
Position
Unknown
AA seq 1163 aa
MAATPGGSDTNQDIRKFFGVVPPGKRQECETVKKSEKIKNGEGSSSGKKRGKETKVNNSP
SEDDSKQKRTSKKKRIIYDSDSEEEVQPVKKSKKPSEKKAATSKLGKVLKRDPVVYISET
DEEDDFVNKRISLKPKENGTSAIGCPGTTTVKTEDVKARPKSKPLSPVKQTPTSALDYFG
TSSVQRSEKKLVASKRKEPTQSRDSTVDDEAIARQLQLEEDSELERQLHEDEEFAKTLAM
LDETPQKKKARKDSGGEQTVLSIKSSPNVTERYKQSERVKATNSTGEAENYTAKRQTKSE
HSKGSHFSPQSSDGKIARELTDKPLPLKPSSKLVSLKQKEEVTQKERDAQNLVSKGKAAS
GKEEKTTPKKEKISPKKTESVSPEDSEKKRINYQAYRSFLNREGPKALGSKEIPQGAENC
LEGLTFVITGVLECIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLG
TKVIDEDGLFDLIRTMPGKKSKYELAAETEAKKAESRPKKTPQKAEAGKRNFSPFKREAE
NKKNKATPEKGDTVKSVKKETTAVRKLMDFKRQTVEKKETPKPKESLVSEINEDGREILL
WVDKYKPVSLKAIIGQQGEQSCANKLLRWLRNWHKNTSEDGQAKTNKTGGKDDSTGFKAA
LLSGPPGVGKTTTASLVCKELGYSYVELNASDTRSKNSLKEVVAESLNNTSIKDFCSGTS
SSVSGKHVLIMDEVDGMAGNEDRGGIQELIGLIRHTKIPIICMCNDRNHPKIRSLVHYCF
DLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMQEIILAANQDIRQVLHNLNMWCAKEKSL
TYDEAKTDASRAKKDIKLGPFDVVRKVFATGEEASRMSLIDKSDLFFHDYSLAPLFVQEN
YVHVKPAAAGGNLKKHLVLLSRAADSICDGDIVDKQIRSKQNWNLLPTQAIYASVLPGEL
MRGYMSQFPVFPSWLGKFSSTGKHDRIIQELAMHMSLRTQTCKRTVNMEYLPYLRDALVQ
PLKDFGADGVQEAITFMDSYCLMKEDVENIMEISTWGGKPSPFSKLDPKVKAAFTRAYNK
EAHLTPYSLNSVKTSKRQSGSAVTLELNEDLNVEEIQSDEDEQDTVESDAMIKQKKAKSS
KLPKREKNEETKKEGKRKEKTRH
NT seq 3492 nt   +upstreamnt  +downstreamnt
atggctgctactcctggaggtagtgataccaaccaggatatccggaaattctttggtgtt
gtacctcctggaaagcgacaagaatgtgagactgtgaaaaagagtgaaaaaataaaaaat
ggtgaaggatcctcaagtgggaagaaaaggggaaaggagactaaggtgaataattcaccc
agtgaagatgattccaaacaaaagcggacaagcaagaaaaaaagaataatctacgattca
gattcggaagaggaggtgcaaccagtgaaaaaatccaagaagccatctgagaaaaaagca
gcaacttcaaaacttggtaaagttctaaagcgggatcccgttgtttatatttcagaaaca
gatgaagaagatgactttgtcaataaaagaatttccctgaaaccaaaggagaatgggacg
tcagcaatcggttgtccaggaacaactacagtgaaaacggaagatgtaaaagcacgacct
aaaagcaaaccattatctccagtgaagcagactcccacctcggcacttgattactttggg
acaagtagtgtccaacgatcagaaaagaaactggtagcaagcaaaaggaaagaacctaca
caaagcagagacagcacagtagatgatgaggccattgctaggcaactgcagcttgaagaa
gattcagagctggagagacagctgcatgaagatgaagaatttgctaaaactttggccatg
ttggatgaaacaccgcagaagaaaaaggctcggaaagattcaggaggagagcaaacagtg
ttgagcatcaagagcagtcctaatgtgacagaaagatataagcagtcagaaagagtgaaa
gcaacaaattcgacaggtgaagcggagaattacaccgcaaagcggcaaactaaatctgaa
cattcaaaagggtctcatttttccccacaatcatctgatggcaaaatagcaagagagttg
acagataagccattgcctttgaaacctagctctaagcttgtgtctctgaaacaaaaagaa
gaggttactcaaaaggaaagagatgctcaaaatttagtatcaaaaggaaaagcggcttca
gggaaagaagagaagacaacaccaaagaaggagaaaatttcccccaagaagactgagtct
gtaagtcctgaggactctgaaaagaagcgaatcaattatcaagcctaccgaagcttcctt
aatcgcgagggcccaaaagcactgggttccaaagagatacctcagggagctgaaaactgc
ttggaaggcctgacattcgtaattacaggtgttctggagtgtattgaaagagatgaggcc
aagtctctcattgaacgttacggaggaaaagtaactggcaatgtcagcaagaagacaaac
tatctggttatggggcgagactgtggccaatctaaatgtgaaaaggcatcaactttaggg
acgaaagttatcgatgaggatggcctgtttgatcttattcgaactatgccaggcaaaaag
tccaaatatgagctggcagctgaaacagaggcaaagaaagcagagtcaagacctaaaaag
acaccacagaaggctgaagctggaaaaagaaattttagcccctttaaaagggaagctgag
aataaaaaaaataaggctactcctgaaaaaggagatactgtcaaatctgttaagaaagaa
accactgctgttcgaaagcttatggactttaaacggcaaactgtagagaagaaagaaacc
ccaaaacctaaggagagcttggtttctgagattaatgaagatggaagagagattttgcta
tgggtagataaatacaagcctgtatctcttaaggcaataattggacaacagggtgagcaa
agctgtgccaacaaactgctccgatggctccgaaattggcacaagaatacctcggaagat
ggacaagcaaagaccaataaaactggagggaaagatgatagtactggttttaaagcagca
ttactttctggtccacctggagttggtaaaactactacagcttctttggtttgtaaggaa
ctggggtatagctatgtggagctgaatgccagtgacactcgaagtaagaacagtctaaag
gaagtagttgctgaatcgcttaacaacaccagcatcaaagacttctgttctggcacatcc
tcatcagttagcgggaaacatgtattgatcatggatgaagtggatggtatggcaggcaat
gaagacagaggagggattcaggagttgattggtttgattagacacacaaagattcccatc
atctgtatgtgtaatgatcgcaaccatcctaaaattcgttccttggtccactactgtttc
gatcttcgttttcagagacctcgtctagaacagattaagggtgccatgatgtctattgca
tttaaagaaggtttaaaaattccaccacctgctatgcaagagataattctggcagcaaat
caggacatcagacaggttttacataatcttaatatgtggtgtgcaaaagagaaatcattg
acctatgatgaggctaaaacggatgccagcagagccaaaaaggatatcaaactgggccct
tttgatgttgtccggaaggtttttgctactggagaggaggcttctcgtatgtctcttata
gacaaatcggatctcttcttccatgattattccctagcacctctctttgtccaagagaac
tatgtacacgtgaaaccagccgctgctggaggaaatctgaaaaagcacttggtgctcttg
agtagagcagctgatagtatatgtgatggtgatatagtggacaaacagattcgtagcaag
caaaactggaatcttcttccaacacaggctatttatgcaagtgttctccccggggagctg
atgagaggttacatgtcccagtttcctgtctttcccagctggctggggaaattttcatcc
acaggcaaacatgatcgtatcattcaagaactggcaatgcacatgagcctcagaacccag
acgtgcaagaggacagtaaatatggagtatttgccgtatttgcgggatgcgcttgtccag
cccttgaaagactttggagcagatggtgtacaagaagctataacgttcatggactcttac
tgtttgatgaaagaagatgttgaaaatatcatggaaataagcacgtggggaggcaaaccc
agtcctttttcaaagctggatcccaaggtgaaagcagcttttacacgtgcctacaacaaa
gaggcacatctgactccatattcacttaattctgtcaagacatctaaaaggcagtcggga
tctgcagtgaccttagaactgaatgaagacttgaatgtggaagagatccaatctgacgag
gatgagcaagatactgttgaaagtgatgcaatgattaagcaaaaaaaagccaagtcttcc
aaactgccaaaaagagagaaaaatgaagaaacaaaaaaagaagggaagagaaaagagaaa
acaagacattaa

DBGET integrated database retrieval system