Charadrius vociferus (killdeer): 104286480
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Entry
104286480 CDS
T08577
Symbol
CHD9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
cvf
Charadrius vociferus (killdeer)
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvf03036
]
104286480 (CHD9)
Chromosome and associated proteins [BR:
cvf03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
104286480 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Chromo
Helicase_C
ResIII
DEAD
HTH_Hrp3
HDA2-3
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
104286480
NCBI-ProteinID:
XP_009883378
LinkDB
All DBs
Position
Unknown
AA seq
2844 aa
AA seq
DB search
MTDPMMDFFDDANLFSETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQDAQ
NPQKMSEFDQLNQYDSLKLHSVNQSFNSSADNVLSPHSQFNCSPIHPQNQSNGMFPDVAD
GSPMWGHQTATTVSNQNGSPFHQGHSQSMQQNKSFVAHHDFALFQANEPQHQCASLRSQQ
SRNNTGQDALSQPKDFMEVNVSTSHRVGVNHPPPVSNPSTSQQPLSVQQFSQTASASIHF
CGNQEGSFDGQSPTITPCSVNNSQQFSSPYSYSNNHISPSSLLQSTTALSTSQQTHSISD
FTGSDAFTSQTGTKQETTEHILNPNTPLNSNSFQMLHSAHPQGNFSSSKLSPVNINFPAS
AGSASQISHFTDPIESNGFTSLDENLLHQVETHNEPFTGLDPDDLLQEDLLPQFDDSAFV
QDSTSHVLEHDLEHHITPQQVTQSSDLVRAQSQSQIHPWHSSVSNQHLQDRSRVTLQGQP
PSSKKTDGSGSYTKLQNTQVRAMSEKKQKKKADLESKQEKANRIISEAIAKAKERGERNI
PRVMSPENFPSVSTEGKEEKKGRKVKSKPKDKESKKPKTGSSSKIKEKTKIGKLIITLGK
KQKRKNESSDELSDAKQTPQRPLKDEDSQKRRSNRQVKRKKYAEEGEGKQSEEEAKVSVK
IKKNSAPLPAKQPLQLFVENPSEEDAAIVDKILSSRVVKKEVSAGMTVETEEFFVKYKNY
SYLHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSL
CEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDQAKIEEFEQLQASRPDSRRLDRPPPN
SWKKIEQSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL
LAGIRGPFLIIAPLSTITNWEREFRTWTDLNVVVYHGSMISRQMIQQYEMYFRDSQGRIV
RGTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL
LTGTPLQNTVEELMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVE
LTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKCCNHPYLIKGAEEKILGEF
KETYSPSAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHK
RYLYERIDXXXXXXXDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHR
IGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGRENSVGGIQQLSKKEIED
LLRRGAYGAIMDEEDEGSKFCEEDIDQILQRRTKTITIESEGRGSTFAKASFVASGNRTD
ISLDDPNFWQKWAKKAEIDIDAISGRNSLVIDTPRIRKQTRPFSATKDELAELSEVESEG
DDKPKLRRPCDRSSGYGRTECFRVEKNLLVYGWGRWREILSHGRFKRQLNEQDVEIICRA
LLAYCLVHYRGDEKIKSFIWDLITPTEDGQTRELQNHLGLSAPVPRGRKGKKVKTQASTF
DIHKAEWLRKYNPEHLLQDEGYKKHIKHHCNKVLLRVRMLYYLKQEVIGNEFQKVFDGID
SSEIDVWVPEPDHSEVPAEWWDADADKSLLIGVFKHGYEKYNTIRADPALCFLERVGKPD
EKAVAAEQRANDYIDGDVEDPEYKPAPAMFKDDIEDDVSSPGDLVIADGDGQMMEGDKIY
WPTQSALTTRLRRLITAYQRTSKNRQAQQIPPAFPIQTSMMQPPYEEAALNPKMAAKIER
QQRWTRREEADFYRVVSTFGVVFDPERGRFDWTKFRAMARLHKKTDESLEKYLYAFMSMC
RRVCRLPSKEELVDPNIFIQPITEERASRTLYRIELLRKVREQALRHPQLFERLKLCQPN
PDLPVWWECGTHDRDLLIGAAKHGVSRTDYHILRDPELSFMSAQRNYNQNKVALSRTSTP
LLHQYQMALAASPLTPQSRLADAKVNAFEDTKAKSENLKEDPQSSGEESMSTEETQTIMK
SEPLSPKNGTPIQNTDHKPSVKTETDRRMVAARTEPLTPNPGSKKQRVSKRGSDSSSDSD
SDSDRSSCSSRSSSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSS
EESDSDEEEAQKREGTPHIKAYDEESVASLSTTQDETQDSFQMNNGTPNSSYLLQGGYML
AASYWPKDRVMINRLDSICQTVLKGKWPSARRSYDSSTVASFYTTKLLDSPGAAADYSEP
SAPTPPLAGVKEEYDQSPQMSKEGGLKLTFQKQGLSQKRPFESEEGALGQQQYLARLREL
QSASETSLVNFPKSLPESGTSSHLTASANGVIVDSQPVVKKRRGRRKNVEGVDVLFINRN
KQPNHVNPGINSCQAAAGINPALPYPQSQGMLDAESPVPVINLKDGTRLAGDDAPKRKDL
ERWLKEHPGYVEDSGACIPRMQLHDGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNA
RKVGGAFAPPLKDLCRFLKENPEYGVAPEWGEVVKQSGFLPEGMFDRILTGPVVREEVSR
RGRRPKSETAKATAAAAAATAASVSVNPLLANGLLPGVDLPSLQALQQNLQNLQSLQVTA
GLMGMPAGLTAGGEAKNVAAMFPMLLSGMAGLPNLLGMGGLLTKSTESISEEKKGSDSKE
ADIKKERTEDQNTDTGGENSVSSSPSTSSAAAAANPLSLNPLLLSNILYPGMLLTPGLNL
HIPALSQSNIFDVQNSESNDTGSAKPTEEKKENSRVRDQEDKGGTEPSSHNENSTDEGSE
KADASSGSDSTSSSSEDSDSSDED
NT seq
8535 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctatgatggatttttttgatgatgccaatctttttagtgagaccttagaa
ggtttgtcagatgatgcctttgttcaacctggacctgtttcacttgttgatgaattgaat
ttgggtgcagaatttgaacctttgcacatagactcattgaaccatgtgcaagatgctcaa
aatccacaaaagatgagtgagtttgatcagctgaatcagtacgattcactgaaacttcac
tcagtaaatcagtcttttaatagctcagctgacaatgtcttatcaccacactctcagttc
aattgttcaccaattcatccgcaaaaccagtctaatgggatgtttccagatgtggctgat
ggtagtcctatgtggggtcatcaaactgccactactgtttcgaatcaaaatgggtccccc
tttcaccaaggacattctcagtctatgcagcaaaacaaaagctttgtagcacaccatgac
tttgccttatttcaggctaatgaaccgcagcatcagtgtgcctccctacggtcgcaacaa
agcagaaacaatacggggcaagatgctctgagtcagccaaaagacttcatggaagttaat
gtatctacttctcacagagtcggtgttaaccacccacctccggtttctaatccatcaact
tcacagcagcctctgtctgttcaacagttttctcaaactgcaagtgcttcaatacatttt
tgtgggaatcaggaaggaagttttgatggacagtccccaactattactccatgttctgtc
aataatagccagcaattttcatctccttattcttactcaaataaccacatttctccaagc
agccttcttcagtctacaacagctctttctaccagccagcagacacactctatctctgac
ttcactggaagcgatgcctttacatctcaaacagggaccaagcaagaaacgactgagcac
atcttgaatcctaatacacctttgaattcaaatagttttcaaatgttgcattctgcgcat
cctcagggcaactttagtagttcaaaactctctcctgtgaatattaattttccagcttcc
gctggttctgcttctcagataagccatttcactgaccctatagaaagcaatggttttaca
tctttggatgagaacttacttcatcaagttgagactcataatgaaccatttacaggactt
gacccggatgacctccttcaggaagacctcctgccgcagtttgatgattctgcatttgtt
caggatagcacaagccatgttttagagcatgacctggaacaccatataacgccacagcaa
gtaacgcagtcatctgatcttgttcgggcacagtctcaaagtcagatccatccttggcat
tcttcagtttctaatcagcatctgcaagacaggagtcgtgtaaccttgcaaggacagcct
ccttcctccaagaagactgatggttcaggatcatatactaagttgcagaatactcaggtg
agggcaatgtctgaaaagaagcagaagaaaaaagcagacttggaaagtaaacaagagaag
gcaaatcgcataatatctgaagcgattgcgaaagcaaaagagagaggagagagaaacatt
ccacgagtaatgagtcctgaaaacttccccagtgtttcaactgaaggaaaagaagaaaag
aagggtagaaaagtgaaatccaaaccaaaagacaaggagagcaaaaaaccaaaaactggt
tcttcatccaaaattaaagagaaaacaaaaattggaaagctaatcatcacactgggtaag
aagcagaaaagaaaaaatgaatcttcagatgaattgtctgatgctaagcagactccacag
cggccgctgaaagatgaagactcgcagaagagacgatcaaatcgtcaagttaaaaggaaa
aaatatgctgaagaaggagaaggaaagcaatcagaagaagaagctaaagtctctgtgaaa
atcaaaaagaattctgcccctttacctgctaaacagcctttacagttatttgtggaaaat
ccaagtgaagaagatgcagcaattgtagacaaaatcttatcctccagggtagtaaagaaa
gaagtatctgctgggatgacagtagaaacagaagagttttttgtaaagtacaagaactac
tcttacctccactgtgagtgggccacagaacaacagcttttaaaggataaaagaatccag
cagaaaataaaacgtttcaaattaaggcaagcacaaagagctcacttttttgcagatatg
gaagaagaaccttttaatcctgactatgttgaagtagaccgagtattagaagtatctctt
tgtgaagataaagacactggtgagcctgttatttactatttagtaaaatggtgttcgttg
ccatatgaagacagtacgtgggagctgaaagaagatgtagatcaagcaaaaatagaagaa
tttgaacaattgcaagcttccaggcctgactcaaggagattggaccgaccacctccaaac
tcctggaagaagatagaacagtccagggaatataaaaatggcaatcagctcagggaatat
caactggaaggacttaactggctcctattcaactggtacaataggcgaaattgcatttta
gcggatgaaatgggtctcggcaaaaccattcagtcaattacattcctctatgaaatcctc
ctggctggtataagggggccttttctgatcatagctccgctttccaccataacgaactgg
gaaagagaatttcgcacgtggactgaccttaacgttgtagtgtatcacggcagtatgatc
agcaggcagatgattcagcagtatgagatgtacttcagggactcccagggacgtatcgtt
cgaggtacctacagattccaagccattatcacaacttttgaaatgattcttggtgggtgt
ccagagttaaatgcaattgaatggcggtgcgttattattgatgaagctcacagactgaag
aacaaaaattgcaaactcttggaaggactaaaattaatgaaccttgagcataaagtgctg
ttaacaggtaccccactgcagaacacagtagaagaattaatgcaagaatttggagacctt
aaaacagaggaacaggttcagaaactacaggctatcctgaaacccatgatgctcagacga
ttaaaggaagacgtagaaaaaaagctggctcctaaggaggaaactataattgaagtagaa
ctaactaatattcagaagaaatattatcgagcgattttggagaaaaattttgcattctta
tccaaaggagcagggcaagcaaatgtacccaatctggttaacactatgatggaactccga
aagtgttgtaatcacccttatctcatcaaaggtgctgaagagaaaatccttggagagttt
aaagaaacttatagcccaagtgctcctgacttccatctgcaagcaatgatccagtctgct
ggtaaattggttcttattgataagcttcttccaaaaatgaaagcaggaggccacaaggtt
cttatcttctctcaaatggtgcgctgccttgatattttggaggattaccttatccataaa
agatacttatatgaacgaattgatgnnnnnnnnnnnnnnnnnnccgatcgctttgtcttc
cttctgtgcaccagagctggtggtttgggcattaatttaactgcagcagatacgtgtata
atttttgattctgactggaatcctcaaaatgatctgcaggctcaagcccgttgtcacagg
attggtcagaacaaagcagtgaaggtctacagactgataacgcgtaactcctatgagaga
gagatgtttgacagagcaagtctcaaactgggactggataaggctgtcttacagagtatg
agtggaagagaaaacagtgtcggtggtatccaacaactctccaaaaaagaaatagaagac
ttgcttcgaagaggtgcgtatggtgccattatggatgaagaagatgaaggctctaaattc
tgtgaggaagacattgaccaaattttgcagcgtcgtactaaaactatcacaattgaatca
gaaggaaggggctccacgtttgccaaggctagttttgttgcatctggaaacaggactgat
atttcattagatgatcccaacttctggcagaaatgggccaaaaaagcagaaatagatata
gatgctatcagtggtagaaacagcctggttattgataccccaagaattaggaaacaaacc
cggccctttagtgctacgaaggatgagctggccgagttgtcggaagtggagagcgagggg
gatgataagccaaaacttcgcaggccttgtgaccgttccagtggatatggaagaacagag
tgctttcgggtggaaaaaaacttgctggtctatgggtggggtcgatggagagaaattttg
tcgcatggtcgcttcaagagacagctgaatgaacaggatgtggagataatttgccgagct
ctgttagcctattgtcttgttcactacagaggggatgagaaaataaaaagttttatatgg
gatctcattaccccaacagaggatgggcaaacacgagagttacagaatcaccttggctta
tcagcccctgtgcctagaggaagaaaagggaaaaaagtgaagacccaggcgagcactttt
gatatacacaaagcagaatggcttcgaaaatacaatccagaacatctgttgcaagatgaa
ggatacaaaaagcacataaaacaccattgcaacaaggtcttgcttcgggtaagaatgctg
tattacttaaaacaagaagtcattggtaatgaattccagaaggtgtttgatggaattgat
tccagtgaaattgatgtttgggtccctgagccagatcactctgaagttcctgccgagtgg
tgggatgcagatgcagataaatcccttctaattggagtttttaaacatggttatgaaaaa
tacaacactatcagagcagacccagcgctgtgcttcttggaaagggttggcaagccggat
gaaaaagcagttgctgctgaacagagagcaaatgattatattgatggggatgtggaagat
ccagaatataaaccagcaccagcaatgtttaaagatgacatagaggacgatgtttcatcc
ccgggtgatctcgtaatagcagatggagatggacaaatgatggaaggagacaaaatctat
tggcccactcagtctgccttaacaacacgtcttcgccgcctaataacagcttaccaacga
acaagtaaaaataggcaggcccagcagatcccgccagcgttcccaatacaaactagtatg
atgcagcctccatatgaagaagcggcgctaaatccaaagatggctgctaagattgaaaga
cagcaaagatggacgagaagggaagaagctgacttttacagagttgtgtccacatttgga
gtggtgtttgatcctgaaaggggccggtttgattggaccaaatttagagcaatggctagg
ctacataagaaaactgatgagagcttagagaagtacttgtatgcgtttatgtcaatgtgc
cggagagtctgtcgtctcccctcaaaagaagaactggtagacccaaacatttttatccag
ccgattacagaggagcgtgcttctcggacgttgtatcgcattgaactcctaaggaaggtg
cgagaacaggctcttagacacccgcagttgtttgagcgactaaaactatgccagccaaac
ccagacttacccgtctggtgggagtgtgggactcatgacagggatttacttattggagct
gctaaacatggagttagcaggacagattatcatattctccgtgatcctgaactctcattt
atgtctgcccagaggaactataatcagaataaagtggcactttcaaggacttctactcca
ctgttgcatcagtaccagatggcattagcggcttctcctcttacgcctcagtcaagattg
gcagatgctaaagtgaatgcttttgaggacacaaaagctaaaagtgaaaatctgaaagag
gaccctcagtcttctggagaggaatctatgtctacagaggagacacagacaataatgaaa
tctgaacctctgagtccaaaaaatggcacaccaatacaaaatacagaccacaaacctagc
gtgaagactgaaacagacaggcgcatggtggcagcgaggacagagcctctaaccccaaac
ccaggttccaaaaaacagagagtcagcaaaaggggctctgactctagctctgactcagat
tctgactcagatagatcatcctgttcttccaggtcatcttcttcatcctcttcatcttcc
tcatcttgttcacactcacgatcaggctctagctcttcatcatcttcatcttgttcttca
gcatcttcatcctcttcatcgtcatcctcatcctcatcatcgtcatcctcatcgtcgtct
gaagagagtgatagcgatgaagaggaggcacaaaagcgtgaaggaaccccacatataaaa
gcatatgatgaagagagtgttgcctctctgagtacgacacaagatgagacgcaagacagt
ttccagatgaacaatgggacaccaaattccagttatctcctacaaggtggatacatgttg
gctgcgtcctactggccaaaggatcgagttatgattaatcgacttgacagtatttgtcaa
acagtgttgaaaggcaaatggccttcagcgagaaggagctatgacagcagtacggtggca
tctttctacacaaccaaacttctggatagcccaggtgcagctgcagattacagtgagccc
agcgcaccaacaccccctcttgcaggtgttaaagaagaatacgatcaatcaccacagatg
tcaaaggaaggtggtttgaaattgacttttcagaagcagggactgtctcagaaaaggccg
tttgaaagcgaggaaggtgcattgggacagcagcaatacctggctcggctccgtgaactc
cagagtgcttcagaaaccagccttgtcaacttcccaaaatcgcttcccgaatcaggtact
tccagtcacttaacagccagtgccaatggagtcatagttgacagtcagcctgtagtcaaa
aagagaagaggaagaaggaagaatgtggaaggagttgatgtcctgtttataaatagaaat
aaacaacctaatcatgttaatccaggtatcaactcctgtcaagctgctgcaggaataaac
ccagcactcccttacccgcagtcccaaggcatgctcgatgcagagagtccggttccagtt
attaacctaaaagatggaacaaggcttgcaggtgatgatgcccccaaaagaaaagattta
gaaaggtggcttaaagaacatcccggatatgttgaagattcaggtgcttgtattcctagg
atgcagctgcacgatgggaggcccaaacaaaaaagacaccgttgtcgaaaccctaataag
ctggatgttaatagtttgactggtgaagaacgtgttcagctcataaatagaagaaacgca
agaaaggtggggggtgcgtttgctccccctctgaaggatttatgcaggttcttgaaagaa
aatccagagtatggagtggctcctgaatggggagaagttgtaaaacagtctgggtttctt
ccagaaggtatgtttgaccgtattctcactggacctgttgtgcgggaagaagtaagccgg
agaggaaggcgccccaaaagcgagactgccaaggcaacagcagctgcagctgctgccacc
gctgcaagcgtatcagtgaaccctctgctagctaacggattgcttccaggagtggatctg
cctagtcttcaggccttacaacaaaacctgcaaaacctgcagtcgctgcaagtaacagcg
ggattgatgggaatgccggctggcttaactgctggaggagaagcgaagaacgtggctgcc
atgttccccatgctgctgtcggggatggctggattaccaaacctgctgggcatgggagga
ctcctgacaaagtccacggaatctatttcagaggaaaaaaagggaagcgattcaaaggag
gcagatataaagaaagaaaggacagaagaccaaaatacggatactggtggtgaaaactct
gtttcaagttctccctcgacatcctctgctgctgcagctgccaatcctctctctctaaac
ccattacttttgtccaacatactttacccagggatgcttctcactccaggccttaatctt
catatcccagctttgtctcagtctaatatttttgatgtacagaacagtgaaagcaatgac
acgggctcagccaagcccacagaagaaaagaaggaaaattctagggttagagatcaggaa
gacaaagggggaacagagccaagctctcacaacgaaaacagcacagatgagggttcagag
aaagcagatgcttcatctggatctgatagtacatcgtcttcatctgaggattcagattct
agtgatgaagactga
DBGET
integrated database retrieval system
