Charadrius vociferus (killdeer): 104286725
Help
Entry
104286725 CDS
T08577
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf04512
ECM-receptor interaction
cvf04514
Cell adhesion molecule (CAM) interaction
cvf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104286725 (SDC1)
04514 Cell adhesion molecule (CAM) interaction
104286725 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104286725 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvf04131
]
104286725 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
cvf04090
]
104286725 (SDC1)
00535 Proteoglycans [BR:
cvf00535
]
104286725 (SDC1)
Membrane trafficking [BR:
cvf04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
104286725 (SDC1)
CD molecules [BR:
cvf04090
]
Proteins
104286725 (SDC1)
Proteoglycans [BR:
cvf00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
104286725 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
104286725
NCBI-ProteinID:
XP_009883651
LinkDB
All DBs
Position
Unknown
AA seq
309 aa
AA seq
DB search
MRQRSDCTQPSDSQYPRKWQTTNLNLPPEDLDSSGDDDDAFSGSGAGPLTDQSHTWRISE
EPTNSSLVVTPVDFNEQPFPGIESRTEKEVISPSATSNVVTEEPVVAVKDEVPILGSPDE
KPTNDVVTTTVRSPTTHFPSVVHVTPSEASGTVHELEPKIPSSDVPDIKDVLDPHATIHH
EGDITATHTTAAPKDVVPTHEEVSEDGSGDPGDFILTKDEDLVPTQNSEVPADSGRNAKA
AGAAGIMDRKEVLGGVIAGGLVGLVFAVFLVAFMLYRMKKKDEGSYSLDEPKQSNGGYQK
PHKQEEFYA
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgcggcagcggagtgactgcacacagccctcagacagccaatatccgcggaaatggcaa
actacaaatctgaaccttcctcctgaagatctcgattcatctggtgatgacgacgatgca
ttctcaggttcaggcgcaggtcccctgactgaccagtctcacacctggagaatctcagaa
gaaccaactaattcctcgttagtggtaacaccagtggatttcaatgaacagccatttcct
gggattgagagccgaactgaaaaagaagtaatatctccttctgcaactagtaatgttgtg
acagaggagccagttgtagctgtaaaggatgaagtacccatcctgggctcacctgatgaa
aaaccaacaaatgatgtggttacaacaacagtgagaagccccactactcactttccttca
gtggttcatgtaactccttcagaagcctcaggcacagtccatgagcttgaacctaaaatc
cctagctctgatgtgccagacattaaagacgtgcttgacccccacgctaccatccatcat
gagggagacatcactgccacccacacgacagcagcaccaaaggatgttgttcctacacat
gaggaggtttctgaagatggctctggagacccgggagactttatcttgactaaagatgag
gatttggtccccacccagaactcagaagtgccggctgactctgggaggaatgccaaagca
gcaggagccgcgggaattatggacagaaaagaagttcttggaggtgttattgctggagga
ctagtaggcttggtgtttgcggtgtttctagttgcatttatgctgtacagaatgaagaag
aaagacgaaggcagctattcactggatgaaccaaaacagtctaacggaggataccaaaaa
ccacacaaacaagaagaattctatgcataa
DBGET
integrated database retrieval system