Charadrius vociferus (killdeer): 104287035
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Entry
104287035 CDS
T08577
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104287035 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvf03021
]
104287035 (SMARCC1)
03036 Chromosome and associated proteins [BR:
cvf03036
]
104287035 (SMARCC1)
Transcription machinery [BR:
cvf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
104287035 (SMARCC1)
Chromosome and associated proteins [BR:
cvf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
104287035 (SMARCC1)
PBAF complex
104287035 (SMARCC1)
GBAF(ncBAF) complex
104287035 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
SWIRM-assoc_2
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT_2
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
104287035
NCBI-ProteinID:
XP_009883988
LinkDB
All DBs
Position
Unknown
AA seq
990 aa
AA seq
DB search
MDFKAGGTLCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLSRPT
IYLIPDIELKLANKLKDIVKRHQGTVTEEKSKATHHVYPSPTSMDDDEWLRPVMKKDKQV
LVHWGYFPDSYDTWVHANEIDAEIEDPPIPEKPWKVHAKWILDTDVFNEWMNEEDYEVDE
NRKTVSFRQRISMKNEEPVRSPERRDRKAAASTRKRKHSPSPPPTPVESRKKTGKKGQAA
LYGKRRGQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDE
QDEETVATGGKEDEDPNKGDQSRSIDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRA
LPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLE
QWGLINYQVDPESRPMAMGPPPTPHFNVLADTPSGLMPLHIRTPQVPAAQQMLSFPEKNK
EKPTDLQNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVG
SRTQDECILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRV
ASAAAKAALEEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEP
EKIDGAEEEKMETETDGQQSEKVENKAESEIEEGDKVQEGENERNPEKEQESEVTADPKP
EEKEAEENKENVDASKDKENEAGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEER
KIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYA
ELRARQQMEQQHSQNPQQSHQHSGGPGMNPLGAPAHPGLLPHQQPPPYPMMHHQMPPPHP
PQPGQMPGPGSMIPGQPMPGRMMPSVSANIHPAGGGPPPPGMSPMSGNLIGPRVPLAAPN
GMYPPPVQPPPPAEGVTPPPAGAPPASAAP
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggatttcaaagctggaggtacattatgtcacattcttggtgctgcttacaaatataag
aatgaacagggctggcggaggtttgacctgcagaatccatcccgaatggatcgaaacgtg
gagatgttcatgaacattgagaaaacactagtgcagaacaattgtctgagcagaccgacc
atctacctcattccagacatagaattgaagttggctaataaattgaaggatattgtcaaa
cgtcaccagggaacagtaaccgaagagaaatcaaaggctacccaccatgtttatccaagt
cctacctcaatggatgatgatgaatggttgagacccgtgatgaaaaaagacaagcaggtg
ctagtacactggggctattttccagacagctatgacacttgggttcacgccaatgaaata
gatgctgaaattgaggatcctccaattcctgaaaagccgtggaaggttcatgccaagtgg
attttggacacggatgtattcaatgaatggatgaacgaagaggattatgaggtagatgag
aacaggaaaacagtgagttttcggcagagaatctccatgaaaaacgaagagcccgtacgt
agtccggagaggagagacaggaaagcagcggcaagtacaaggaagaggaagcattctcct
tctccgccccccactcctgtggagtcgagaaaaaagacagggaagaaaggacaagcagcc
ttgtatgggaaaaggagagggcagaaagaagaagatgagcaagaagatcttacaaaggac
atggaggatcccacaccagtacctaatatagaagaagtggtacttcccaaaaatgtgaac
ccaaagaaagacagtgaaaacacgcctgtgaaaggaggaacagtagcagacctcgatgaa
caggatgaggagacagtggcaaccggaggaaaggaagatgaagatcctaacaagggtgat
caaagccggtcaattgatccaggtgaagataacgtcacagaacaaaccaaccacatcatt
attccaagctatgcatcttggtttgactacaactgtattcatgtgattgaacgtcgtgct
cttcctgaattcttcaatggaaaaaacaagtccaagactccagaaatatacttggcttac
cgcaatttcatgattgacacctatcgcttaaaccctcaagagtacttgaccagcactgcc
tgcagaaggaatctgactggagatgtgtgtgccgtcatgagagtacatgctttcctggag
cagtggggtctcattaactaccaagtggacccagaaagccgtcccatggcaatgggccct
cctcctactcctcacttcaacgtgttggctgatacgccctctggactgatgcctctccat
atccgcactccacaggttccagctgctcagcagatgctgagttttcctgagaaaaacaaa
gagaagcctactgatctgcagaactttggacttcgcaccgacatttactcaaaaaagact
ttagcaaagagtaaaggtgcgagtgctggaagagagtggacagaacaggagacgttgctg
ctattagaagctctggagatgtacaaagatgactggaacaaagtctcggagcacgttggg
agccgtacccaagatgagtgcattctccattttctgagactccccatcgaagacccctat
ttggagaactccgacgcctccctgggcccgctggcgtaccagcccgtacctttcagccag
tcgggcaacccagtgatgagtaccgtcgcttttctggcatcggtggtggatccccgggtg
gcgtctgccgcagcaaaggctgccttagaggaattttctcgagtcagagaagaagtacca
ctggagctcgttgaagctcatgtaaagaaagtacaggaagcggcaagagcctctgggaag
gtggatccaacgtatgggctggagagcagctgcattgccggaacgggtccggatgagccg
gagaaaattgatggagctgaggaagaaaagatggaaaccgagacagatgggcaacagtct
gagaaggttgaaaacaaagcggagagtgaaattgaggaaggcgataaggtacaagaagga
gaaaatgagagaaatccagaaaaagagcaagagagcgaagtgactgcggaccccaagcca
gaagaaaaggaggcagaagagaacaaggagaacgttgatgcaagcaaagacaaagaaaac
gaggctgggaagaagaaagtggaacatgaaatctcggaaggaaacgtagctacagctgca
gctgctgcccttgcctcagctgccaccaaagcaaagcacctagcggcagtggaagaaaga
aagatcaagtccctggtggcccttctggtggaaacacagatgaagaagctggagataaaa
cttcgccattttgaggagctggaaaccattatggacagagagaaagaggcattagagcag
cagagacagcagttgctgacagaacgtcagaattttcacatggaacagctgaaatacgct
gaattaagggctcgtcagcaaatggagcagcagcacagtcaaaacccacagcagtctcac
cagcactccggtgggcctgggatgaacccccttggggcaccagcacatccaggcttactg
ccgcatcagcagcccccgccgtaccctatgatgcaccaccaaatgccaccacctcaccca
ccacagccaggtcagatgccggggcccggttcgatgatacctggacagcccatgccaggc
cggatgatgccaagtgtgtcggccaacatccatccagccggcggtggtccccccccgcct
ggcatgtcaccgatgtcaggaaatctaattggacctcgtgttcctctagcagctccaaat
ggcatgtatccccctcctgtgcagccgcctccgccagcggaaggggtgaccccacctccg
gcaggagctcccccggcctcagccgctccctaa
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