Charadrius vociferus (killdeer): 104287353
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Entry
104287353 CDS
T08577
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03008
Ribosome biogenesis in eukaryotes
cvf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104287353 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
104287353 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvf03021
]
104287353 (XRN2)
03019 Messenger RNA biogenesis [BR:
cvf03019
]
104287353 (XRN2)
03009 Ribosome biogenesis [BR:
cvf03009
]
104287353 (XRN2)
03016 Transfer RNA biogenesis [BR:
cvf03016
]
104287353 (XRN2)
Transcription machinery [BR:
cvf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104287353 (XRN2)
Messenger RNA biogenesis [BR:
cvf03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
104287353 (XRN2)
Ribosome biogenesis [BR:
cvf03009
]
Eukaryotic type
Pre-60S particles
RNases
104287353 (XRN2)
Transfer RNA biogenesis [BR:
cvf03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
104287353 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
104287353
NCBI-ProteinID:
XP_009884353
LinkDB
All DBs
Position
Unknown
AA seq
929 aa
AA seq
DB search
MHFQAKECNGVKAPIDTSKPNPNEVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAI
FEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAEEKQKIRQEILA
KGGILPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIADRLNSDPGWKNLTVILSDASAP
GEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREEFKPNKPK
PCGLCNQMGHEVKDCQGLPREKQGKHDQFADSLPIAEQEFIFIRLCVLREYLERELTMAS
LPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVHKTGGYLTES
GFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKEKRKRMKRDQPSFIPGGQFSPQ
ALGNRSSPQAISNPRQAAFEMRMHDRQNSTTSSSPNTSLTSDGSPSLAGGIKRKAEDSDS
EPEPEDNIRLWETGWKQRYYKNKFDVDASDEKFRRKVVQSYVEGLCWVLRYYYQGCASWN
WYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMGVFPAASGNFLPPTWRKLMTDP
ESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEESRRNSLGG
DVLFVGKHHPLCDFIVEQYKTKNTEPVDIPPELCHGIQGKLTLNENAVLPDQVVESPVPM
LRDLAQNSAVSISFKDPQFDEDFVFKAVVLPGAKKPAPVLKPGDWEKTNNDGRPWRPQLG
FNRDRKPVHLDQSAFRTLGHTMPRERWMPGMYANAVPLGTYGSPYTRPLLSGQQQIPKLL
SNLRPQESWRGPTPLFQQTPQRTAGAAPLLAWNRMLQSQNQFQPNQYQGLGGPMSYPQRP
EDRMDRGRQAYGPGRPYPLPPPSGRYSWN
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgcactttcaagctaaagagtgcaatggcgtcaaggctccaattgatacaagcaagccg
aacccgaatgaggtggagtttgataacctgtatttggatatgaatggtataattcaccct
tgtacacatccagaagacaaaccagcacccaaaaatgaagatgaaatgatggttgcgatt
tttgagtatattgacaggatcttcaacattgtaagaccaaggcgacttctttacatggct
atagatggagtagctccacgtgcaaaaatgaatcaacagcggtcaagaagattcagagca
tcaaaggagggcatggaagctgctgaagagaagcaaaaaataagacaagaaattctggca
aaaggtggcattcttcctccagaagaagtgaaagagagatttgacagcaactgtattacc
ccaggaactgagtttatggacaatcttgctaaatgtctccgctattatattgctgaccgt
ttgaacagtgacccagggtggaaaaatttgacagttattttgtctgatgctagtgctcct
ggtgaaggtgaacataaaatcatggattacattagaagacaaagagcccaaccaaaccat
gacccaaacactcatcattgtctgtgtggggctgacgctgatctgattatgcttgggtta
gctacacatgaaccaaacttcactataattagggaagagtttaaaccaaataaacccaag
ccgtgtggtctttgtaaccagatgggtcatgaggttaaggattgccaaggtttgcccaga
gaaaaacaaggcaagcatgatcagtttgcagacagccttcctattgccgaacaagaattt
atcttcatccgattatgtgttttgcgagagtatttggaaagagaactcaccatggccagt
ttgcctttcacttttgattttgaaagaagtgttgatgactgggtctttatgtgctttttt
gtgggaaatgactttcttcctcatctgccatctttggagatcagggagggagcaattgat
cgcttggttaacatatataaaaacgtggtgcacaaaactggggggtacctcacagaaagt
ggttttgtcaacctacagcgagtccagatgatcatgttagctgttggagaagttgaagat
agtattttcaaaaagagaaaagatgacgatgataattttaaaagacggcaaaaagaaaaa
agaaaaagaatgaagagggatcagccttcttttattcctggtggacagttttcccctcaa
gctctgggaaatcgatctagccctcaggcaatcagtaaccctagacaagccgcctttgag
atgagaatgcatgacagacagaattctacaacttcatcatctccaaataccagcctcact
tctgatggcagcccatcactggcaggaggaattaagcgaaaagctgaagatagtgacagt
gaacctgagccagaggataatatcaggttatgggaaaccggttggaaacagcgctactat
aaaaacaaatttgatgttgatgcgtctgatgagaaattccgtcgtaaagttgtacagtcc
tatgtggaagggctttgctgggttctcagatattattatcagggctgtgcatcctggaac
tggtattacccttttcactatgctccatttgcttctgactttgagggtattgcagacatg
ccttcagattttgagaaaggctcaaaaccgtttaagcctcttgaacaacttatgggagta
tttccagctgcaagtggaaattttctgccaccaacatggaggaagctcatgacagatccg
gaatcaagcataattgacttctaccctgaagattttgctattgatttaaatgggaagaaa
tacgcttggcaaggtgttgcattattgccatttgttgatgagcgacgccttagagctgca
ctggaagaagtctaccctgacctcactcctgaagaaagcagaagaaatagccttggtggt
gatgttctctttgttggaaaacaccatccactttgtgactttattgtagaacagtacaag
accaaaaatacagagccagttgatatacccccagaactgtgccacggaatccaggggaag
cttacactgaatgaaaatgccgttcttccagatcaggtagtggagtctcctgttccaatg
ctgcgtgatcttgcgcaaaattctgcagtcagtatctctttcaaagatccacaattcgat
gaagactttgttttcaaggctgtagtgttacctggtgcaaagaaacctgctccagttctg
aagccaggagactgggaaaaaaccaacaacgatggcaggccctggagaccacagcttggt
tttaaccgagacagaaaaccagtccatttggaccagtcagcatttagaactttaggccat
acgatgccaagggaaagatggatgccaggaatgtacgccaatgcagtacctcttggaact
tatgggagcccatacaccaggccgcttctgagtgggcagcagcagattccaaaattgttg
tcaaatcttagacctcaggagtcttggcgaggtcctacgcccttgtttcaacagacacca
cagagaactgccggagctgctcctcttcttgcctggaaccgcatgctgcaatcccaaaat
cagttccagccaaatcagtaccagggactgggtggaccaatgagttacccacagagacct
gaagatcggatggacaggggaagacaggcatatggccccgggaggccctacccgctacca
cctccctcaggaagatacagctggaattag
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