Charadrius vociferus (killdeer): 104287785
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Entry
104287785 CDS
T08577
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104287785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvf03019
]
104287785
Messenger RNA biogenesis [BR:
cvf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104287785
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
104287785
NCBI-ProteinID:
XP_009884819
LinkDB
All DBs
Position
Unknown
AA seq
647 aa
AA seq
DB search
MSQRYLPPVTSENLFGNPAGFLQPRGAPRQEAHNGRLHSSTLRIELISKCDIHFARQRHR
KRLRGEGVVNPSLWRASGPARAVHRTRSHQRHLRRKHDRLTALVVGDSGARRGSRADDTT
GKQEDGPISGHAESSHPLQDAPQENRPVGNDDREMSQHALPSGEDDEDDSDSDSDDDDVK
VTIGNIKTGAPSYMGTPMNLNLKTGRGYGASASAKLQPKGIDLDAAGNINGLPVIEVDLD
SFEDKPWRKPGADLSDYFNYGFNEETWKAYCEKQRRLQLGLDPAPPISTENKITVQQGRT
GNAEKEVENNIIKTEFKTDFLALVGGRMKAGPPPNRKLGGTIDVIGGQAGTIRRVEGRRR
DKHASEENPIQVLGDHGSKPQPPQQPQQPSQPQQPPQQQPFAPPAGPPPPPLAGPPPPHF
LHPPPPVTSVPPPLHPPGLPPPGPIPGLFPPPLAPPPALLIPTLDGQPASYNNRQPPPFG
YNSADSGFISYPPISTSHTPWVTTVDKGTSSSSSSHWEYSGSRRERERERERERERERDR
DRTPTTSEYNNDDERYRYYSRERSYDFERDYRRSRDRSREREDRHRERRHRDKEESSKHK
SSRRKQHESEEGESHRRHKHKKNKRSKEEKEASEDGAQEGEEQDAKE
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagcgttatttgcctccagtcacttccgaaaacctctttggaaatccagcggga
ttcctccagccccggggagctcctcggcaggaggcccacaacggccgtttgcactcgtcc
actctccgcattgagctaatttcgaaatgtgacatccactttgccagacagcgccatcgt
aagaggctccgcggggaaggggtcgttaacccaagcctgtggcgcgcctcgggccctgcc
cgggctgtgcaccgcaccagatcccatcagcgacacctgcgacggaaacacgacagactt
actgctttggttgtcggcgacagcggagcccggcgcggttcacgtgccgatgacaccact
ggtaagcaagaagatggaccaatttctggacacgcagagtcttctcatcctttgcaagat
gctcctcaggagaaccggcctgtcggcaacgatgaccgagagatgtcgcaacatgccctt
ccaagtggtgaagatgatgaagatgacagcgacagcgacagtgatgatgatgacgtgaaa
gttactattggcaacattaaaacgggagcaccatcgtacatgggaactcctatgaatcta
aacttaaaaacgggtagaggctatggagcatctgcttcagccaagttgcagcccaaaggt
attgacttagatgccgcagggaatataaatggattgcctgttatagaagtggatttagat
tcatttgaagacaaaccgtggaggaaaccaggtgctgatctttctgattactttaattac
ggattcaacgaagaaacatggaaagcttattgtgaaaagcagcgacggcttcagcttgga
ctggatcctgctcctcccatcagcactgaaaataaaatcacggttcagcaaggaagaaca
ggaaatgctgaaaaagaagtggaaaacaacatcatcaaaacagaattcaaaacagacttc
ttggctctggtgggaggacgcatgaaggctgggcctcctcctaataggaagctgggtggg
acaattgatgtgatcggtggccaggcaggcacaattaggagagtggaaggaagacgacgt
gataaacatgcctctgaggaaaacccaattcaggtccttggagaccacggaagtaagcca
caacccccacagcagccccagcagccatcacagccccaacagccacctcagcaacagccg
tttgcaccaccagcaggcccaccgcctcccccgctcgctgggccacctccaccacacttc
ctccaccctcctccaccagttacttctgttccacctcccctgcatcctccaggtctgccg
ccacccggtcctattccagggttgttcccgcctcctctggcaccaccaccagctctcctc
attccaaccttggatggccagccagccagctacaataacaggcagcctcctccgtttggc
tacaactctgcagattcaggtttcatcagctacccacccatctccacgtcccacacgccc
tgggtgacgacggtggacaaaggcacaagcagttccagcagcagccattgggaatactca
ggctcaaggcgtgagagagagcgggagcgtgagcgggaaagggagagggagagagacaga
gaccgcactccgaccactagtgaatataacaatgatgatgaacgataccgctactacagc
cgagagcgcagctatgactttgagcgtgactaccgccggagtcgagatcgcagcagggag
cgagaggatcgtcaccgagagcgcaggcacagagacaaagaggagagcagcaagcataag
tcttcaagacgcaagcagcacgagagcgaggagggagagagtcatcggcgtcacaagcac
aaaaagaacaagcgtagcaaagaggagaaggaggccagtgaggacggtgcccaggaggga
gaggagcaggatgccaaggagtga
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