Charadrius vociferus (killdeer): 104287793
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Entry
104287793 CDS
T08577
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf04136
Autophagy - other
cvf04140
Autophagy - animal
cvf04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104287793 (ATG16L1)
04136 Autophagy - other
104287793 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
104287793 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvf04131
]
104287793 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
cvf03029
]
104287793 (ATG16L1)
Membrane trafficking [BR:
cvf04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
104287793 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
104287793 (ATG16L1)
Mitochondrial biogenesis [BR:
cvf03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
104287793 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
ATG16
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_IFT140_1st
eIF2A
Beta-prop_NWD2_C
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Ge1_WD40
CCDC93_CC
Beta-prop_SPT8
ZapB
INO80F
Beta-prop_Vps41
Fez1
WD40_like
HTH_6
Lipoprotein_6
AP5B1_middle
PALB2_WD40
FUSC
HEF_HK
DUF2332
V_ATPase_I
WH_CYT4
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
104287793
NCBI-ProteinID:
XP_009884826
LinkDB
All DBs
Position
Unknown
AA seq
545 aa
AA seq
DB search
MQSRHEISPGHDGTWNDAQLQELAQLKIKHQEELTELHKKRGELAQSVIDLNNQMQQKDK
EMQMNEAKIAEYLQKISELETECQELRSKLQDLERANQTLKDEYDALQITFNALEEKLRK
TTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEPDDDIEV
LADETSDTAEETSPVRAVSRTASKRLSQPAGGLLDSITNIFGRRSLSSFPAPQDNVEPHP
GASKEVRVPTTAICVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVLGDRCEPKGSL
SGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDNRLRHTLTGHSGKVLSAKFLLDNAR
IVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRTESIV
KELELLGRITALDLNSERTELLTCSRDDLLKIIDLRVSAVKQTFSAQGFKCGSDWTRVVF
SPDGNYVAAGSADGALYIWNVLTGKLERTLAKHHSSSINAVAWSPAGAHVVSVDKGNKAV
LWSEF
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcagacatgagatcagtccaggacatgatggcacatggaatgatgcgcagttg
caggagctggcacagctgaagataaagcatcaagaggagttgacagaactgcataagaaa
cgtggcgagttggcccagtctgtaattgatttgaataaccaaatgcagcagaaggacaaa
gagatgcagatgaatgaagcaaagattgcagagtatttgcagaagatctctgaactggaa
acagagtgccaggaattgcgtagcaaactgcaagaccttgagcgagctaatcagacgctg
aaagatgaatatgatgctctccagatcacctttaatgccttggaggagaaactaaggaaa
actacagaagacaaccaggaactggtctcacgttggatggcagagaaagcacaagaagcc
aatcgcttgaatgcagaaaatgaaaaagattcaaggagacgacaagctaggctgcagaag
gagctagcagaagctgccaaagaacccctgcctgttgaaccggatgatgacattgaagtg
cttgcagatgaaacctctgacacagctgaggagacatctccagtgcgagctgtcagccga
acagccagtaagcgactctcccagccagctggaggccttctggactctatcactaatatc
tttgggaggcgttctttgtcctcgttccctgctccgcaggataacgtagagccacatcca
ggtgccagtaaagaagtgagagtgcccactactgccatatgtgtctttgatgcacatgat
ggggaggtgaatgcagtgcagttcagccctggctcccggttactagcaacaggaggcatg
gaccggagggttaagctttgggaagtcttgggagataggtgtgagcccaaaggttccctc
tctggtagtaatgctgggattacaagcatagaatttgatagtgctggttcttacctctta
gcagcttcaaatgactttgccagtagaatctggacggttgatgacaatcgattacggcac
accctgacaggtcacagcggtaaagttctgtcagccaaattcttgctggacaatgcacgc
attgtttcgggaagccacgaccggaccctcaagctctgggacctccgcagcaaagtttgt
ataaaaacagtgtttgcaggatctagctgcaatgacatcgtatgtactgagcaatgtgta
atgagtggacattttgataagaaaattcgtttctgggatatcaggactgaaagcatagta
aaagaactggagctgcttggaagaatcacagctctggacctgaactcagagcgaacagag
cttttgacctgttcccgtgatgatctactgaagatcattgatctgcgggttagcgctgtc
aagcagacattcagcgcccagggattcaaatgtggctctgactggacgagagttgtgttc
agccctgacggtaactatgtggctgctggttcagctgatggggccctctacatttggaat
gtgctcactgggaaattggagaggacgcttgcaaagcatcacagttcttctatcaatgca
gtcgcgtggtcaccagcgggtgctcatgtggtcagtgtggacaaaggaaacaaggctgtc
ctgtggtctgaattttga
DBGET
integrated database retrieval system
