Charadrius vociferus (killdeer): 104287971
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Entry
104287971 CDS
T08577
Symbol
CSPG4
Name
(RefSeq) LOW QUALITY PROTEIN: chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
cvf
Charadrius vociferus (killdeer)
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cvf00535
]
104287971 (CSPG4)
04091 Lectins [BR:
cvf04091
]
104287971 (CSPG4)
Proteoglycans [BR:
cvf00535
]
Cell surface proteoglycans
Others
104287971 (CSPG4)
Lectins [BR:
cvf04091
]
C-Type lectins
Others
104287971 (CSPG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
104287971
NCBI-ProteinID:
XP_009885009
LinkDB
All DBs
Position
Unknown
AA seq
2385 aa
AA seq
DB search
MGLVGGGFLPLLTLSLSSPASFFGDGYVEMPLADASRTLRLHLQLYTSQGSGLLFLAAGQ
PDHLLLQLRAGTLQARLQLGSEEVTLQSPAELQLNNLVVHDVELLVEDGRMTLTIDSLFN
SSADIVGPVRELDIQYGLYAGGTGSLDLPYLAEASSPFRGCLHLVTFNGLDVLSPPSSDG
SSKIFHRVQEGCSTQFSAEPEEPFGFLGPHSYIAFPTWDAREEATIEFVITTSITQAPLI
YHAGLENDFFYLEISNGRLRGFVEKGNGIIVLHNNIFISDEQQHYVKVYTDIHKFEILID
YYASSTSNRGINNYLDLQGNLFIGGMNEKALQRLREHHLAFISVWTMTNNSFVGCLEDLR
INLQRRSLQDAVITKDITSGCGKQDHYWDYEEVYEQDEAPTSPPPDVWSGAPGLVVEACQ
PDNSFPPAFANISRLLHVSPLIVSEGGMTYLEWKHAQPTVDLSLANIRQSQILFSITNDP
RHGQLELDIPGSRSRRKFTLLDIVNRKVRYVHDGSEGPMDQLMLEVTVTAQQGVPECLQQ
GQMYLLPIMINPVNDPPQVIFPHGNHMTILKHTRKHLTTDILQVLDDDTSCDDLEFQLHG
GQQMEEGYVEYDFHPGVPIEEFSCRDLEAGNIVYVHQSGTNSQLTLQVSDGTVPSPIATL
RIVAIDPDIRLHNNTGLSISQGGAARITTANLSAETNAVEQQVAILYVLTEPLRYGEVQK
QGSVGGDWKKVESFHQQDLEQGRIQYFSTDSEHRLEDVVEKLRFEVQVGQKVLQNNTFLI
RIERATIKMRTMVPLQMKNKRHRNITSKELEAMLEDPNSAPVPFQYVIIQAPKKGNLELL
GNRLTEGFGFTQDDLQRNHLSYSATIRNSQQAEDTFQFRVRSGKQHSPVYTYTISIGGDP
DAPALTNVLLTVPEGGQAVISKDHLFVQSTNSMDYLYEVIEGPAHGRLAWAASHGWASRE
EITEFTNDDILHRRLLYQHDDSETLEDDIPFVAIRQGEGSAEPDVEEVRGVFRVSIQPIN
DHPPVQVVNKVFNVVRNGQHLLTTDDIAFTDKDSGFSDTQLVLARKDILFGSIFSVDDRS
HQVYRFTQDDLRKKKILFVHSGADRGWIQLQVSDGLHQTTALLEVQASDPYIKVVNNTGL
VIHQGSRGTIDSSVLSLETNMDIRSEEEIRFLITTPPRWGTVLRGEQPVMAFSQRDLLAG
EISYRHNGSRNSRDELQFTVEAKEVAVEDTLAISVFLDTHPSPLSIVNNKEIHVFQGEAA
GIKEEYLLVAHEEIPPQDIVYLVRSPPAYGFLAMLQQGRDSNEQPSLDPIQSFTQEDINN
GRVLYLHSKPEEERDQFVVDITASGADPLERVVVSLAVLPITVPLDVRNITVPGGGSVTL
STGILNIPNSHYTALGVEFKVLEPPRFGTLLNSERPEDGRLHSFTWNEVENQQIQYRQDG
PPQAQVDSFTLLANASEMDRQSQPRTLFITILPHSSKGPRLRVNAGLQLREGTMAAIGPH
ILSAEDEDSPAEEVTYSIQPPANGKVVLRSAPGAEVRRFTQAQINNGLVLFAHQGQALAP
SHSTVVQTVPGXWGSQPLYPPXMPNSMLSAGSLDGGFAFDLWDGENLSPGHFFLIRAQRE
PLISLAKKQSLTVCPGALQPITSQNLQAVSNSPTSSTALYYSIEQAPRLGRLSTSRGEEI
RNFTQAQVDSELIFYQHEMPEKPFWLAQDAIRFRVVAPTTISDSFILLVLISFEARCPQR
LTQLWRNAGLQLARAQQAEIDTSVLDASNLLSQIQVPERAAHDVVFLVTELPAHGQLLVA
GLPLERSRPFFLQSDLATGRLAYAHGGDGISEDHFRFKAWLRPRSQQSIRPPQEGVVISE
AFNITVTSSSSKPLQVVKRQEVLQVPPGSMVTLSQEYLDVADPSGSPEEMVYSVLQRSLT
GHLANAHSPQEPINRFTQADVNAGHVVFVATGRRAPGSLALSLSDSHHPPTLTSLEIEVL
PAVSTAASLVPLEVPQDLNRALVSHHHLLGAAQLGAGNVLYRITRHPRFGQVQVNQKPVR
GFSQKQLDRGEVTFTFTNLTSPEDNFQFLAMSRAVNRTGVVNVTVRALVKARPDSVWPRG
TTALLDTGVLDASMLANRTKSIPVFKIRRAPHGSRLVRVSRDPGQPTTPIETFSQSELEQ
ALVGLEVLDAGETDLPQQSDSFVFELVADGVPPALASLGYSSEPYNASKAYGVTLLMAPL
APSLPVPQPRGTARSSPNASELGMPPTAWPGPGATTSPSPVEGGTFLSFIEANMFSIIIP
ICLIFLLLALILPLLFYLHKRNKTGKHHVQGTPSSKAKNGTVPDQETFRRTDPNQGIPLT
TVNALEGKGTGPPPQGTGPGAPPDPELLQYCRTSNPPLKNNQYWV
NT seq
7158 nt
NT seq
+upstream
nt +downstream
nt
atggggctcgtgggagggggtttccttcccctcctgaccctctccctttcctccccagct
tctttcttcggggacggctacgtggagatgccgctggcagacgcctctcgcactctgcgg
ctccacctgcagctgtacaccagccaggggagcgggctgctcttcctagccgccggccag
cccgaccacctcctgctgcagctgcgagccggcaccctgcaggccaggctgcagctgggc
tcggaggaggtgacgctgcagtccccagcagagctgcagctcaataacctggtagtgcat
gacgtggagctgctggtggaagacggcaggatgacactgaccattgacagcctcttcaac
agctccgcagacattgtaggacccgtacgggagctggacatccaatacggcctctacgct
ggtgggacaggcagccttgacctgccgtaccttgccgaggccagctcgccattcagaggt
tgcctccacttagtgacattcaacggcctggatgtcctctccccaccatcctctgatggc
agctccaagatcttccaccgggtccaggaagggtgcagcacacagttctctgcagagccc
gaagagccctttgggttcctggggccacactcctacattgcttttcctacgtgggatgcg
agggaggaagcgaccatcgaatttgtgataacaacaagcatcacccaggcacccctcatc
taccacgcagggctggagaatgacttcttctacctggagatctccaacgggcgcctgaga
gggtttgttgagaaggggaacggcatcatcgtcttgcacaacaacatcttcatcagcgat
gagcagcagcactatgtcaaagtctacacggacatccacaagtttgagatcctgattgat
tactacgcctcatccacgtccaaccggggcatcaacaactacctggaccttcagggaaac
ctcttcattggaggtatgaacgaaaaagctttgcaaaggctgagggagcatcatcttgct
ttcatctctgtgtggaccatgaccaacaactcgtttgttggctgcttggaggacttgcgg
ataaacctgcagagaaggagtctgcaagatgccgtgatcacaaaggacatcacatcaggc
tgtggaaagcaagatcactactgggactatgaagaggtgtacgagcaggatgaggcaccc
acctccccacctccagatgtctggtcgggagcaccaggcctggtggtggaagcgtgccag
ccagacaacagcttcccacctgcctttgccaacatcagtaggctgctgcatgtcagcccc
ctcatcgtctctgaagggggcatgacctatctggagtggaaacacgcccagccaacagta
gacttgagccttgcaaacatccggcagtcccaaatcctcttcagcatcaccaacgaccct
aggcacggccagctggagctggacattcctgggtccaggagcagaaggaagttcaccttg
ttggacattgtgaataggaaagtcagatacgtccatgatggctctgaggggcccatggac
cagctgatgctggaggtgacagtgactgctcagcaaggggtgccagagtgcttgcagcag
gggcagatgtacctactgcccatcatgatcaaccccgtcaatgatcccccacaggtgatc
tttccccatgggaaccacatgacaatcctgaagcacacacgaaaacacctgaccacagac
atcctgcaggtcctagatgatgacacatcctgtgatgacctcgaattccagctgcatggt
ggccagcagatggaagagggttatgtggagtatgacttccatcctggagtgcccattgaa
gagttctcctgcagggacctggaagcaggcaacatagtctacgtgcaccagagtgggaca
aactcacagctcaccttgcaggtgagcgacggcacagtcccaagtcccattgccaccctg
aggatcgtcgccattgaccctgacatccgcctgcacaacaacactggcctgtccatctcc
caaggaggggctgcacgcattaccacagccaacctgtcagcagagacaaatgccgtggaa
caacaggttgccattctgtatgtcctcacagagcccctaaggtatggtgaggtccagaaa
caagggagcgtgggaggggattggaaaaaagtcgagtccttccaccaacaagacctggag
caagggcgcatccagtatttcagcacagactcagagcaccgactggaagatgttgtggag
aagttgagattcgaagtccaggtggggcagaaggtcttgcaaaacaacacctttctcata
aggattgaaagagccaccattaagatgaggaccatggtccccctccagatgaagaacaag
cggcacagaaatatcaccagtaaggagctggaggcaatgttggaagatccaaactctgcc
ccagtccccttccagtacgtgataatccaggctcccaaaaagggaaacctggagctgctc
ggcaacaggctgactgaaggctttggatttacccaagacgacctgcaaagaaaccacctg
agctacagcgcaaccatcaggaactctcaacaagccgaggacaccttccagtttcgtgtg
cgctctggcaagcagcactctcctgtctatacctacacaatcagcattggtggagaccct
gatgcaccagccctgaccaatgtcctcctgaccgtgccagaaggagggcaagccgtcatc
tccaaggaccacttgtttgtacagagcacgaacagcatggactacctctacgaagtaatt
gaggggccagcacatgggaggctggcctgggctgcgtcccatggctgggcctccagagag
gagatcacagagttcaccaacgatgacatactccaccgccggctgctgtaccagcacgat
gactccgagacactggaggatgacatccccttcgtagcgatcaggcagggcgagggcagt
gctgagcctgatgtagaggaggtgagaggggttttcagggtctccatccaacccatcaat
gaccaccctccagtccaggtggtgaacaaggtcttcaatgtggtgcgcaatgggcagcac
ctgctgacgacagatgacattgccttcactgacaaggactctggcttctccgacacacag
ctggtgctggcaaggaaggacattttgtttggcagcatcttctccgtcgatgacagaagc
caccaggtctatcggttcacacaggatgacttgaggaagaagaagatcctctttgtccat
tcgggggctgaccgaggctggatccagctacaggtctcagatggcctccaccaaaccaca
gccctcctggaagtacaggcatcagacccctacatcaaagtagtcaacaacaccggacta
gtcatccaccaaggcagccgagggaccattgactcctctgtcctcagcctggagaccaac
atggacatcaggtcagaagaagagatacggttcctgataacgacacccccaaggtggggg
accgtgctgcgaggggagcagccggtcatggccttctcccagagggacctcctagcagga
gagatctcctaccgccacaacgggagcaggaacagccgggatgagctccagttcactgta
gaagcaaaggaggtggcagtggaggacacgctggccatcagtgtgttcttggacacccat
cccagccccctgagcatagtcaacaacaaggagatccatgtcttccagggggaagcagct
gggatcaaggaggagtacttactggtggcccacgaagagatccccccccaggacatagtc
tacctggtgagaagccccccagcgtacggcttcctggcgatgcttcagcaaggccgagac
tcaaatgagcaacccagcctggaccccatccagtccttcacccaggaggacatcaacaac
ggcagagtcctctacctccactccaagccggaggaggagcgtgaccagtttgtcgtggac
atcacagccagcggtgcggacccactggagagggtggtggtgagcctggccgtgctcccc
atcaccgttcccctggatgtccgcaacatcacggtgccgggaggtggctccgtcaccctc
tccacgggcatcctcaacatccccaactcccactacacggctctcggcgtggagttcaag
gtgcttgagcccccccgctttgggaccctcctgaacagcgagcggcccgaggatggcagg
ctgcacagcttcacctggaacgaggtggagaaccagcagatccagtacaggcaggacgga
ccgccacaggcccaggtggacagcttcaccctgctggccaacgcctccgagatggaccgg
cagagccaacccaggaccctcttcatcaccatcctgccccacagctccaaggggccgcgg
ctgagggtcaacgccgggctgcagctgcgggaaggcaccatggctgccatcggcccccac
atcctgagcgccgaggacgaggactccccagcagaggaggtgacctactccatccagccc
ccggctaacgggaaggttgtgctgcggtcggcacccggcgctgaggtccggcggttcacc
caggcccagataaacaacggcctcgtcctcttcgcccaccaagggcaggcgctagcccca
tcacacagcactgtggtccaaaccgtgccaggttaatgggggtcacagcccctctacccc
ccataaatgcccaactccatgctttccgcagggtccctggatgggggcttcgcctttgac
ctgtgggatggtgagaacctgtctcctgggcacttcttcctcatcagggcccagagagag
cccctcatcagcctggccaagaagcagagcctcactgtctgcccaggtgccctccagccc
atcaccagccagaacctgcaggcagtgagtaacagccccaccagctccaccgctctctac
tacagcatcgagcaagccccacgcctgggcaggctgagcacctcccggggggaggaaatc
cggaacttcacccaagcccaggtggacagcgagttgattttctaccagcacgagatgcca
gagaagcccttctggctcgcccaagatgccatccgcttccgcgtggtcgctcccacgacc
atctccgattccttcatcctcctcgtgttgatctctttcgaggccaggtgtccccagcgc
ttgactcagctatggagaaacgcaggtctccagcttgcaagggctcagcaggctgagatt
gacacctcggtgctggatgcctccaaccttctaagccaaatccaagtccccgagagggct
gcacatgatgtcgtcttcctggtgacggagctgccagctcacgggcagctcttggtggct
ggtctgcctctggagcggtcacggccattctttctgcagtcagacctggccacaggacgc
ctggcatatgcccatggcggagacggcatctccgaagaccatttcagatttaaggcttgg
ctccggccccggtcgcagcagtccatccgtcctccacaggaaggggtagtcatctccgaa
gctttcaatataacagtgaccagcagcagcagcaagccactgcaggtggtaaagcggcaa
gaagtgctgcaggtcccaccaggctccatggtgaccttgtcccaggaatacctggatgtg
gcagacccatcaggttccccagaggagatggtgtacagtgtcctccagagatccctcact
ggccacctggccaacgcacacagcccacaggagcccatcaaccgcttcacccaagcggat
gtcaacgcaggccacgtggtgtttgttgccactgggagacgtgccccagggtccttagcc
ctgagcctctctgacagccaccacccacctaccttgacctcgctggagattgaggtgctg
cctgcagtgagcaccgctgccagcctggtgccactggaggtgccccaggacctgaacagg
gccttggtgtcccaccatcacctcctgggagccgcacagcttggggcaggcaatgtcctg
tacaggatcaccaggcacccaaggtttggccaagtgcaggtcaaccaaaagccagtgcgg
ggcttctcacagaagcagctggaccgcggggaggtgaccttcaccttcaccaacctcacc
tctcctgaggacaacttccagttccttgccatgtctcgggcagtgaacaggactggggtg
gtgaacgtgaccgtccgtgccttggtgaaagctcggccggacagcgtgtggcccaggggc
accacagccctcctggacactggcgttcttgatgccagcatgctggccaaccgcaccaag
agcatcccagtctttaagatccgcagggcaccccatggcagccgtcttgtgagggtctcc
agggacccaggacaacccaccaccccgatcgagaccttcagccaaagcgagctggagcaa
gcgctggtcgggctggaggtgctggatgctggggagaccgacctgccacagcagagtgac
agctttgtctttgagctggtggctgacggcgtgccaccagcactggcatccctgggatac
agcagtgagccctacaacgcctcaaaagcctatggtgtcaccctgctcatggcccccctg
gcaccctcacttccagtgccccaaccccggggcacagcacggagcagccccaatgccagc
gagctggggatgccacccaccgcctggccgggtcccggtgccaccaccagccccagcccc
gtggaagggggcaccttcctcagcttcatcgaggccaacatgttcagcatcatcatcccc
atctgcctcatcttcctcctgctggctctcatcctgcccctgctcttctacctgcacaag
cgcaacaagacggggaagcaccatgtccagggcaccccttcctccaaggccaagaacggg
actgtgccagaccaggagaccttccggaggacggaccccaaccaaggcatccccctaacg
actgtcaatgccctggagggcaagggcacaggtcccccaccccagggtacgggtcctggg
gcaccaccagaccccgagcttctccagtactgccggacttccaacccccccttgaaaaac
aaccagtactgggtgtga
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integrated database retrieval system
