Charadrius vociferus (killdeer): 104288246
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Entry
104288246 CDS
T08577
Symbol
PNN
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03013
Nucleocytoplasmic transport
cvf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104288246 (PNN)
03015 mRNA surveillance pathway
104288246 (PNN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvf03019
]
104288246 (PNN)
03041 Spliceosome [BR:
cvf03041
]
104288246 (PNN)
Messenger RNA biogenesis [BR:
cvf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104288246 (PNN)
Spliceosome [BR:
cvf03041
]
Complex C
Other components
EJC/TREX
104288246 (PNN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
104288246
NCBI-ProteinID:
XP_009885323
LinkDB
All DBs
Position
Unknown
AA seq
685 aa
AA seq
DB search
MPKEDARTFNKREPSAALSPPQSSEQLPTEPPQNRLLAITGPGGGRGRGSLLLRRGFSDS
GGGPPAKQRDLEGATSRLGGERRTRRESRQESDAEDDDIKKPALPSSVVATSKERTRRDL
IQDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEVQAEEERKQV
ENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTKPHLFYIPGRM
CPATQKLMDESQKKMNALFESRRNEFAEQINKMEARPRRQSVKEKEHQEVQNEEKKEEQN
KEQEEGKVAQQVEELETGNQHNDVEMEEVGEEKGKTGSGHSDAEKEQEDDEQKHEVEIKV
EEATEVRENDKQQDGQHEEVTVVKEESENIQPVDNEQEVAEMNEADSVEPVENENGKEVE
PETECDAQPEKVCNVPSPEKEEDIKAEIEAEPEEKQEKAPEAQPEPVAEAPSQPQSVPLP
QSPQLSQATQDTESQADKDENAVVSVKVVEAQTEQSQTPSVEIKSKTRSRSRGRAGNKTG
KSHSRSSSSSSSSSTSSSTSTGSSSSTGSSSSRSTSTSSSTTSGSTSRDSSSSSSSSSES
RSRSRGRGHNRDRKRRRSTERKRRDASGVDRSHKSSKGGSRDTKSSKEKSSRSDRKRSIS
ESSRSGKRTSRSERDRKSDRKDKRR
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaagaggacgcccgaacgtttaataagagggagccatccgcagctctctctccc
ccccaaagcagcgagcagcttcccaccgagccccctcaaaacagactgttagccatcaca
ggccctggtggaggtagagggcgtgggagcttattgctgaggcgtggattctcggatagt
ggaggaggacccccagccaaacagagggatcttgaaggggcaaccagtaggctgggtgga
gaacgtcggacaagaagagaatcacgccaagaaagcgacgcagaagatgatgatattaaa
aagccagcgttgccatcttctgttgtggctacctccaaagagcgaacacgtcgagacctt
atacaggatcaaaatatggacgagaaaggaaaacaaaggaatcgacgtatatttggcttg
ttgatgggcactcttcaaaaatttaagcaggagtccacggttgctactgagaggcaaaag
agacgacaagaaattgagcaaaaacttgaagtgcaggcagaagaagaaagaaagcaagtt
gaaaatgaaaggcgagaactattcgaagagagacgtgctaaacagacagagctgcggtta
ctggagcaaaaggttgagcttgctcagttgcaagaagaatggaatgaacataatgctaaa
ataattaaatacataagaacgaagacaaaaccccacttattctacatacctggcagaatg
tgtcctgctacgcagaagctgatggacgagtcacagaaaaagatgaatgcactctttgaa
agcaggcgaaatgaatttgcagagcagattaacaaaatggaggccaggcccagaagacaa
tctgtgaaggaaaaagaacatcaggaggtgcagaatgaagaaaagaaggaagaacagaac
aaggagcaggaagagggtaaggtggctcagcaggtggaagagttggagacaggtaatcag
cacaatgacgtagaaatggaggaggtaggggaggaaaagggaaaaacaggttcagggcat
agtgatgcagagaaagaacaggaagacgatgaacagaaacatgaagtggagattaaggta
gaagaggctactgaggtgagggagaatgacaagcaacaggatggtcagcatgaagaggtc
acagttgtaaaagaggaaagtgaaaacattcagccggtggataatgagcaggaggtggct
gaaatgaatgaggcagatagtgtagaacctgtagaaaatgaaaatggcaaagaagtggaa
ccagaaacagagtgtgatgctcagccagaaaaagtgtgtaatgttccttctcctgagaag
gaggaggatattaaagcagaaattgaagctgaacctgaagaaaaacaggagaaggcacct
gaagctcagccagaacctgtggctgaggctccgtctcagccacagtctgtgccactgcca
cagtcacctcagttgtctcaggccactcaggatacagagtcccaggcagacaaggatgaa
aatgctgtggtgtctgtaaaggtggttgaggcacagacagagcagagtcagacgccgagc
gtagaaattaagagtaagactaggagtagaagcaggggtagggcagggaacaaaactggt
aagagtcatagccgtagtagcagcagcagtagtagcagtagtacttcaagcagtactagt
actggaagtagttccagcactggcagcagtagcagtcggagtacttccaccagcagcagc
actacaagcggaagtactagcagggacagtagcagcagtagctctagcagtagtgagagt
cggagtcgaagccgaggaagagggcataacagagatagaaaacgcagaaggagcacggag
aggaagcgaagggatgcttcaggagtagatagaagtcacaagtcctcaaaaggtgggagt
agagataccaaaagctcaaaggagaaaagttcaagatctgacagaaagaggtctatatca
gaaagtagtcggtcaggcaagagaacttcacggagtgaaagagaccgtaaatcagacagg
aaagacaaaaggcgttaa
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