Charadrius vociferus (killdeer): 104288405
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Entry
104288405 CDS
T08577
Symbol
ABCA1
Name
(RefSeq) ATP-binding cassette sub-family A member 1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf02010
ABC transporters
cvf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
104288405 (ABCA1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104288405 (ABCA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cvf02000
]
104288405 (ABCA1)
Transporters [BR:
cvf02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
104288405 (ABCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
104288405
NCBI-ProteinID:
XP_009885510
LinkDB
All DBs
Position
Unknown
AA seq
2248 aa
AA seq
DB search
MAFWTQLGLLLWKNFTYRRRQTFQLLIEVAWPLFIFFILISVRLSYPPYEQHESGTLPWI
QGIICNANNPCFRYPTPGESPGIVGNFNASIVSRLFSDAKRLLLYSQQDTSIKDVQKVLG
KLRKLGNSSGSDLKLRDFLVDNETFSDFLLHNVSMPSSAVEELLDAEVNLQQVIVSGYRM
RLRDLCNSSTLSEFLTIQNRTVAMGSEAFICTLPKEKLHAAEQAFRANLNPLKPLQVSPL
VPPDLSETVEALRESLGKLVKELLSMKSWSDMRQEVMFLTNVNASNSSTQIYQAVSRIVC
GHPEGGGLKIKSLNWYEDNNYKALFGGNSTEDDVTNFYDNSTTPYCNELMKNLESSPLSR
IIWRALKPLLIGKILYTPDTPAIRKVMTEVNRTFQELGVFRDLGGMWEEISPKIWTFMES
SQEMDLIRTLLKGKALWDLHLPASNWTVEDIARFLSNRPEDFETANGSVYTWVDAFNETD
RAIQTISRFMECVNLDKLEPVGTEVRLINKSLELLDERRFWAGIVFTEIAPNSIELPQHV
KYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVQTGTE
KKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLKETMR
IMGLDNGILWLSWFISSLIPLLMSAGLLVLILKMGNLLPYSDPSVVFVFLSIFGVVTILQ
CFLISTVFSRANLAAACGGIVYFTLYLPYVLCVAWQDYVSFSLKIFASLLSPVAFGFGCE
YFALFEEQGVGVQWDNFFESPLEEDGFSITTSAVMMLFDTFLYGVMTWYIESVFPGQYGI
PRPWYFPFTKSYWFGEEPQDRQHPHPDQKGPSEVCKEEEPMHLSLGVSIQNLVKVYRDGK
KVAVDGLTLNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAFILGKDIRSELSTIR
QNLGVCPQHNVLFDLLTVEEHIWFYARLKGLPEKKVKEEMEQMAVDVGLPHKLKARTSKL
SGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQGRTIILSTHHMDE
ADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVDSSLSSCRNSSSTVSYLK
KDDSVSQSSSDAGLGSDHESDTLTIDVSAISNLITKHVPEARLVEDIGHELTYVLPYKAA
KEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVADDSGVDAETSDGTLPARRNRR
VFGDRQSCLRPFTEDDVFDPNDSDIDPESRETDLLSGMDGKGSYQMKGWKLTQQQFMALL
WKRLLIAKRSRKGFFAQIVLPAVFVCIALMFSLIVPPFGKYPSLELQPWMYDEQYTFISN
DAPEDAGTQRLLDALLNKPGFGTRCMQGHSIPDTPCTVGQSEWTTASVPDSVLDIFLKGN
WSMENPSPSCECSNEKIKKMLPVCPPGAGGLPPPQREQDTADILQNLTGRNISDYLVKTY
AQIIGKSLKNKIWVNEFRYGGFSLGASSSLMLPPSHEVTDAIKQVKKILELAQGSSGDRF
LNSLSSFMKGLDTKNNVKVWFNNKGWHAIASFLNVINNAILRANLQQGKNPSAYGITAFN
HPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHLQFISGV
KPVIYWLANFVWDMCNYIVPATLVIIIFICFQQKSYVSSSNLPVLALLLFLYGWSITPLM
YPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNNINDILKSVFLIFPHF
CLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVEGVVFFLITVLIQYR
FFIKPRPVYAKLPPVNDEDEDVTRERQRIISGGGQSDILEIKELTKIYRMKRKPAVDRIC
VGIPPGECFGLLGVNGAGKSSTFKMLTGDTDVTGGEAFLKGNSILSNIQEVHQNMGYCPQ
FDAVNELLTGREHLEFFALLRGVPEKEVCKVGEWAIRKLGLVKYGEKYAGNYSGGNRRKL
STAIALIGGPPVVFLDEPTTGMDPKARRFLWNCALSVIKEGRSVVLTSHSMEECEALCTR
MAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGANPDLKPVEEFFGHAFPGSVLKEKHR
NMLQYQLPSSPSSLARIFSILSQNKKRLHIEDYSVSQTTLDQVFVNFAKDQSDDDHTKDL
SLHKNQTVVDIAILNSFLQDEKVKESCV
NT seq
6747 nt
NT seq
+upstream
nt +downstream
nt
atggctttctggacgcagctgggattgctgctgtggaagaacttcacctacagaagaaga
cagactttccagctgctgatcgaagttgcctggcctctgtttatcttcttcatcctgatc
tctgtaagactttcatatccgccttacgagcagcatgaatcaggaaccttgccgtggata
caggggatcatctgcaatgccaacaacccttgtttccgctacccaactcctggggaatcc
cctggtattgttggaaacttcaatgcctccattgtttcccgcctgttctcagatgccaag
aggttactcttgtacagccaacaggacacgagcataaaggatgtccagaaggtcctggga
aaactgcgcaagttgggaaactcctctggctcagacttgaaacttcgggatttcctggtt
gacaatgagacgttctcagacttcctcctccataatgtgtccatgccatcatcggcagta
gaggagctactggatgcagaggtcaacctccagcaggtcattgtgtctggctaccgaatg
cgactgcgagatctctgcaatagctcaacactgtctgagtttcttacaatccaaaatcgg
acggtggccatgggctctgaagcattcatttgcaccttgccaaaggaaaaacttcatgca
gctgagcaagccttccgtgctaacctgaatcctttgaagccccttcaggtgagtccactg
gtcccacctgatctgtcagaaactgtggaagctttgagagagagccttgggaagcttgtt
aaagagctgctgagcatgaagagctggagcgacatgaggcaagaggtgatgttcctgacc
aatgtgaatgcctcaaactcctctacgcagatctaccaggctgtgtcacgcattgtgtgt
ggccatcctgaaggtggagggctcaaaattaaatccctcaactggtatgaggataacaat
tacaaagcactgtttggaggcaacagcactgaagatgatgtaactaacttctatgataac
tccacaacaccctactgcaatgagctgatgaagaacctggaatccagcccgctttccagg
attatctggagggctttgaagcccttgctgattgggaagatcttgtacactccagataca
ccagccataaggaaggtcatgactgaggtgaacaggacgttccaggagctgggtgtgttt
cgtgacctcggggggatgtgggaggagataagcccgaagatctggacgtttatggaaagt
agtcaggaaatggatctcattcggacgctgctgaaaggcaaggctctctgggacctgcac
ttgccagcttccaactggacagtggaggacattgcccgttttctgtcaaaccgtccagag
gactttgagacagcaaatggctcagtgtacacctgggtggatgccttcaatgagacagac
cgggctatccagactatctcccgcttcatggagtgtgtcaatttggacaaactggagcct
gtgggcacagaagtcaggcttataaacaagtccttggagcttctggatgaaaggaggttc
tgggctggcatagtcttcactgaaatagcccctaacagcatagagctccctcagcatgtg
aaatataagatacgcatggacattgataatgtggaaaggacaaataagatcaaggatggg
tactgggatcctggtccccgtgctgacccctttgaggacatgcgttatgtttggggaggc
tttgcctaccttcaggacgtggtggaacaggccatcatcagggtgcagacaggcacagaa
aagaagacaggagtttatgtgcagcagatgccctacccatgttatgtggacgacatattt
ctccgtgtcatgagccgctccatgcctctctttatgactctagcctggatctactcagtg
gctgtgataattaagggcattgtgtatgagaaggaagcccgactgaaggagacaatgagg
attatgggacttgacaatggcatcctttggctaagctggttcattagcagcctcatccct
ctcctgatgagtgcaggcctgctggtgctgatccttaagatggggaatctgctgccttac
agcgaccctagtgtggtgttcgttttcctgtcgatcttcggtgtcgtgaccatactccag
tgcttcctcatcagcacagtgttctccagggccaacctggcagctgcctgtgggggaatt
gtctatttcacgttgtacctgccttacgtgctgtgtgttgcctggcaggactatgtcagc
ttctcactcaagatctttgcgagcctgctgtctccagtagcctttggctttggttgcgag
tactttgcactgtttgaagagcagggagttggtgttcagtgggacaacttctttgagagc
ccattagaagaagatggctttagcatcactacatctgctgtcatgatgttgttcgacacc
ttcctgtatggggtcatgacctggtacatcgagtctgtcttcccaggccagtatgggatt
cccaggccctggtactttcctttcacaaagtcctattggtttggcgaggaaccacaggac
aggcagcatcctcatcctgaccagaaggggccttcagaagtctgcaaggaggaagagcct
atgcatctgagccttggtgtttccatccagaacctggtcaaggtttatcgtgatggcaag
aaagttgctgtagatggtctcacgctgaacttctatgaaggacaaatcacctcctttctg
ggacataatggagcagggaaaaccactaccatgtccatcttgactggcttgtttccccca
acctcgggtacagccttcatcctgggcaaagatatccgctctgagctcagcaccatcagg
cagaacctgggtgtctgtccacaacacaatgtgctgtttgacttgctgactgtggaggag
cacatctggttctacgctcggctcaaagggctgccggaaaagaaggtgaaagaggagatg
gagcagatggcagtggatgttggtttgcctcacaaactgaaagctaggacaagcaaactc
tctggtggcatgcagaggaaactctcagttgccttagcctttgttggtggctccaaagtt
gtcattctggatgagcctacagctggggtggatccttattctcgcagagggatatgggag
ctgctgcttaagtatcggcaaggccgcactatcattctctccacacaccacatggatgag
gcagatattctgggggaccggattgccataatctctcatggcaaactctgctgtgttggc
tcttctctcttcctgaagaaccagctgggaacaggctattatttgaccctggtcaagaag
gatgtggattcttctctgagctcttgccgaaacagcagcagcacagtgtcctatctgaag
aaggatgacagtgtctcccagagcagctctgacgctggccttggcagtgaccatgaaagt
gacacactgacaatagatgtctctgcaatttcaaatcttattacaaaacatgttcctgag
gccaggctggtggaggacatcggccatgaattaacctatgtcttgccatacaaggctgct
aaagagggagcttttgtggagctgttccatgaaattgatgaccgtctctctgatcttggc
atttccagctacggcatctctgaaactaccctggaggagatcttcctgaaagtggctgat
gatagcggtgtggatgcagaaacctcagatgggacgttgccagccagaaggaacaggcgt
gtgtttggagacagacagagctgccttcgtccattcacagaagatgatgtatttgatcct
aatgattcagacatagatccagaatccagagagacagaccttctcagtggcatggatggg
aaaggctcctaccagatgaagggctggaagctcacccagcagcagttcatggctctgttg
tggaagaggctgcttattgccaagagaagccggaagggcttctttgctcagattgtgctg
ccagctgtttttgtgtgtattgctctcatgttcagcctgatcgttcctccctttgggaag
tatcccagcctggaattacagccctggatgtatgatgaacagtacacttttattagcaat
gatgctccagaagatgcaggcactcagagacttttggatgcccttctcaataagcctggt
tttgggacacgctgtatgcagggacactccatcccagacactccttgcactgtggggcag
agcgaatggaccactgcttcagtcccagactcagtcctggacatcttcctgaaaggcaac
tggagcatggagaacccttccccatcttgtgagtgcagcaatgagaagatcaagaagatg
ctgcctgtgtgtccccctggtgcaggcgggctgccacccccacagcgtgagcaagacact
gctgatatcctccagaatctgacaggccgcaatatctcagactatctagtgaagacctat
gcgcagatcattgggaaaagcttaaagaataagatctgggtgaatgagttcaggtatggc
ggcttttccttgggagccagcagttctctcatgcttcctccaagccatgaagtcactgat
gccattaaacaggtgaagaaaatcttggagctagcacaggggagttctggagatcggttt
ctgaacagcttgtcaagtttcatgaaaggcctggatacaaagaacaacgtgaaggtgtgg
ttcaacaacaaaggctggcatgccattgcctccttcctgaatgtaatcaacaatgccatc
cttcgggccaacctgcagcagggcaaaaaccctagtgcttatgggatcactgccttcaat
cacccactcaacctcaccaagcaacagctctctgaagtagctttgatgacaacctctgtg
gatgtcctagtctccatctgtgtgatctttgccatgtcctttgttcctgccagctttgtg
gtcttccttatccaggaacgtgtcagcaaggctaagcacttgcagttcatcagtggtgtg
aagcctgtgatctactggctggccaactttgtctgggatatgtgcaactacattgttcca
gccacactagtcatcatcatcttcatctgcttccagcagaagtcctatgtatcctcttcc
aacttgcctgtgctggctctccttctgtttctctatgggtggtccatcacccctctcatg
tatccagcttccttcgtgttcaaaatccccagcacagcatatgttgtgctgaccagtgtg
aacctctttattggcatcaatggtagtgtggccaccttcgtcctggagctcttcaccaac
aacaagctgaacaacatcaatgacatcctgaagtctgtcttcctcatcttcccccacttc
tgcctggggcggggacttattgacatggtgaaaaaccaggctatggctgatgctctggag
aggtttggagaaaatcgttttgtgtcccctctgtcatgggacctggtgggaaggaacctc
tttgccatggcagtagagggcgttgtcttcttcctcatcacagtgctcatccagtacagg
ttcttcatcaaacccaggcctgtctatgcaaagctgcctcctgtgaatgatgaagatgag
gatgtaaccagagagagacagaggataattagtggaggaggacagagtgacattttggaa
atcaaggagctaaccaagatttacagaatgaagcgaaagccagcggttgataggatctgt
gttggaatccctcctggagagtgctttggactcctgggggtgaatggtgctggcaagtca
tccactttcaagatgctaactggtgatacagatgtgacaggaggagaagctttcctcaaa
ggaaacagtatcttgtccaacatccaagaagtccatcagaacatgggctactgtccacag
ttcgatgctgttaatgaactgctgacagggcgagagcacttggagttctttgcactcctg
agaggtgttccagagaaagaagtctgcaaggttggcgagtgggcaattcggaaactgggc
cttgttaaatatggagaaaaatatgctgggaattacagtggagggaacaggcgcaagctc
tccacagccattgccctcattggagggccacctgtggtgtttctggatgagccaacaaca
gggatggatcccaaagcacgtcgtttcttgtggaactgtgctctgagtgtaatcaaagag
gggagatcagtggtactcacatctcacagcatggaagaatgtgaagccctgtgcactcga
atggcgataatggtcaatgggcgattcaggtgtctgggcagtgtccaacatctaaagaac
aggtttggagatggttacaccatagtagtgagaattgcaggggcaaacccagacctgaag
cctgttgaggagttctttgggcatgccttccctggaagtgtcctgaaggaaaagcatcgg
aatatgctgcagtaccagcttccctcttcaccatcctccctggccagaatattcagtatt
ctctcccagaacaaaaagagactccacatagaagactactccgtttctcagaccacactt
gaccaagtatttgtaaattttgctaaggaccaaagcgacgacgaccacactaaggacctg
tcattgcacaaaaaccagactgtggtagatattgcaatccttaattccttcctgcaagat
gagaaggtaaaagaaagttgtgtgtga
DBGET
integrated database retrieval system
