Charadrius vociferus (killdeer): 104288458
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Entry
104288458 CDS
T08577
Symbol
ITGB5
Name
(RefSeq) LOW QUALITY PROTEIN: integrin beta-5
KO
K06588
integrin beta 5
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf04145
Phagosome
cvf04148
Efferocytosis
cvf04510
Focal adhesion
cvf04512
ECM-receptor interaction
cvf04810
Regulation of actin cytoskeleton
cvf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104288458 (ITGB5)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
104288458 (ITGB5)
04148 Efferocytosis
104288458 (ITGB5)
09144 Cellular community - eukaryotes
04510 Focal adhesion
104288458 (ITGB5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104288458 (ITGB5)
04810 Regulation of actin cytoskeleton
104288458 (ITGB5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvf04131
]
104288458 (ITGB5)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cvf04515
]
104288458 (ITGB5)
Membrane trafficking [BR:
cvf04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
104288458 (ITGB5)
Cell adhesion molecules [BR:
cvf04515
]
Integrins
Integrin beta subunits
104288458 (ITGB5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
Integrin_b_cyt
EGF_integrin
EGF_2
I-EGF_1
EGF_TEN
EGF_Teneurin
WD40_Apc4_C_fungal
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
104288458
NCBI-ProteinID:
XP_009885570
LinkDB
All DBs
Position
Unknown
AA seq
637 aa
AA seq
DB search
MDLSLSMNDDLDNIRNLGTKLAEEMRKLTSNFRLGFGSFVDKNISPFSYTAPRYQNNPCI
GYKLFPSCVPSFGFRHLLSLTDKVDRFNEEVQKQKVSRNRDAPEGGFDAILQAAVCKEKI
GWRKEASHLLVFTTDDVPHIALDGKLGGLVQPHDGQCHLNEANEYSASSQLDYPSLALLG
EKLAENNIHLIFAVTKNHYVLYKNFTALIPGTTVEILHKDSKNIIELIVKAYNSIRSKVE
LTVWDSPEDVGLTFTATCQDGLSYPGLRKCGDLKIGDTVSFEVAVEARSCPTEDTSHAFT
IKPAGFRDTLAXXXXGNGASACGLCECDAGYLGARCECEEGASGDMHHAMCREAEGKPLC
SGRGECSCNQCLCYESEFGSIYGAFCECDDFSCARYKGVLCSGHGECHCGECKCHAGYIG
DNCNCSTETDSCVSSDGQMCSGRGTCVCGKCQCTEPGAFGETCEKCPTCPGVCSTKRDCI
ECKLFNSGRLADNQTCQKHCKDEIITTVDVLETDDPNAILCAYPVNNCVMKFTYLELASG
KSNLTVLKEPACSSAPSAVTIVLAVIGSVVLIGIILLGLWKLLVTIHDRREFDRFQSERS
RARYEMASNPLYRKPISTHNVEFTFNKLNRSYNGTVD
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggatctctccctgtccatgaatgacgacctagataatattcgcaatctggggaccaag
ctggctgaagagatgcgaaagctcactagcaatttccggctggggtttggatcttttgtg
gacaaaaacatttctcctttctcctacacggcaccaagataccaaaacaatccctgcatt
ggttacaagctgttccccagctgcgtcccatcctttggcttccgccacctcttgtcccta
acggataaagtcgaccgtttcaacgaagaagttcagaaacagaaggtttcccgcaaccga
gatgctccagagggtggtttcgatgcgattttgcaggctgccgtgtgcaaggagaagatc
ggctggcgtaaggaggcatctcatctgctggtcttcacaacggatgatgtgccccacata
gccctggatgggaagctgggggggctggtgcagccccacgatggccagtgccacctgaac
gaagccaacgagtacagcgcgtccagccagctggattatccttccctggcacttcttggg
gagaaacttgccgaaaacaacatccacctgatcttcgctgttacgaaaaatcattacgtc
ctgtacaagaactttacagccttgattcctgggacaacagtagagattttgcacaaagac
tccaagaatatcatcgagctgatcgtcaaggcctacaacagtattcggtccaaggtggag
ctcacagtctgggacagccctgaggacgttggcttgaccttcactgccacgtgtcaggat
ggattgtcctatccggggctcaggaagtgtggggatctcaaaataggagatacggtttcc
ttcgaggtggcggtggaggcacggagctgccccactgaggacacctcccatgccttcacc
atcaagcctgccggttttcgggacacgctggcnnnnnnnnnnnncggcaacggggcctcc
gcctgcgggctgtgcgagtgcgacgccggctacctgggggccaggtgcgagtgcgaggag
ggtgccagcggggacatgcaccacgccatgtgccgggaggcggagggcaaacccctctgc
agcgggagaggggagtgcagctgcaaccagtgcctctgctacgagagcgagttcggaagc
atctacggcgccttctgcgagtgcgacgacttctcctgcgccaggtacaagggagtcctc
tgctcaggtcacggagagtgtcactgcggggagtgtaagtgccacgccggttacatcggg
gacaactgcaactgctccactgagacggacagctgtgtttccagcgacgggcagatgtgc
agcggcaggggcacctgtgtctgtgggaagtgtcagtgcactgagccaggggcttttgga
gagacgtgtgagaagtgtcccacctgcccaggtgtctgtagcactaaaagggactgcatt
gaatgcaagctgtttaactcaggaagactggctgataaccaaacctgccaaaagcactgc
aaggatgagatcatcaccactgtggatgttctcgaaacggatgacccgaacgccatcctc
tgtgcctacccggtgaacaactgtgtcatgaagttcacctacttggagcttgccagtggg
aaatccaacctcaccgtcctcaaagagccagcatgcagctcagcccccagtgccgtgacg
atcgtgctggcggtgatcggcagcgtggtcctcatcggcatcatcctcctgggactctgg
aagctgctcgtcaccattcacgacagacgggagttcgaccgattccagagtgaacggtcc
cgggccagatatgaaatggcatccaatcctctctatcgaaagcctatttccacgcataac
gtagagttcacgttcaacaagctcaacaggtcttacaatggtacagttgactga
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