Charadrius vociferus (killdeer): 104288510
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Entry
104288510 CDS
T08577
Symbol
ERCC3
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPB subunit
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03022
Basal transcription factors
cvf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104288510 (ERCC3)
09124 Replication and repair
03420 Nucleotide excision repair
104288510 (ERCC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvf03021
]
104288510 (ERCC3)
03400 DNA repair and recombination proteins [BR:
cvf03400
]
104288510 (ERCC3)
Enzymes [BR:
cvf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
104288510 (ERCC3)
Transcription machinery [BR:
cvf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104288510 (ERCC3)
DNA repair and recombination proteins [BR:
cvf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104288510 (ERCC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
AAA_34
Motif
Other DBs
NCBI-GeneID:
104288510
NCBI-ProteinID:
XP_009885631
LinkDB
All DBs
Position
Unknown
AA seq
741 aa
AA seq
DB search
MRNVEESGTKVDEYGAKDYRLQMPLKADHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVA
IAEPVCRPTHIHEYKLTAYSLYAAVSVGLQTSDITEYLQKLSKTGVPDGIIQFIKLCTVS
YGKVKLVLKHNRYFVESTHPDVIQQLLQDHVIKECRLRNAEGEETELITETFTSKSAISK
SSEGGFGPSTSQGADAQSKSDVPADLFEFYEQMDKDEEEEEETQTVSFEVKQEMIEELQK
RCIHLEYPLLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPC
GAGKSLVGVTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG
CSIAISTYSMLGHTTKRSWEAERVMEWLKSQEWGLMILDEVHTIPAKMFRRVLTIVQAHC
KLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREY
VAIKTKKRILLYTMNPNKFRACQFLIKFHERRNDKIIVFADNVFALKEYAVRLGKPYIYG
PTAQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGR
VLRAKKGMVAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEELS
FSSKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSAQVSRRTGTMSSMSGADDTVYMEYH
SSRSKASANKHIHPLFKRFRK
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgcggaatgtggaagagagcggcaccaaagtggacgagtacggggcgaaggactaccgg
ctgcagatgcccctgaaggccgaccactcctcgcggcccctctgggtggctcctgatggc
catatttttctggaagccttttctccagtttacaaatacgcccaggattttctggttgcc
attgcggagcccgtgtgcagaccaacccacattcacgagtacaagctgactgcgtactcg
ctgtacgctgctgtcagcgttggcctccaaacaagcgacatcacagagtatttacaaaaa
ctgagcaagactggtgtcccagatggaataattcagtttatcaagctgtgtaccgtcagc
tatgggaaggtgaagctggtgctgaaacataacaggtattttgtggaaagtacccaccct
gatgtcattcagcagcttttgcaggaccatgtaattaaagaatgtcgtctgagaaatgct
gagggtgaagaaacagagctcattacagagacattcacaagtaaatcagcgatttccaaa
tccagtgaaggtggctttggtccatcaacatcacagggagcagatgctcagagtaagtca
gatgtcccggctgacctatttgagttttatgaacagatggacaaagatgaggaggaggag
gaggaaacacagacagtgtcttttgaagtcaagcaggagatgattgaagaacttcagaag
cgttgtatccatttggagtaccccttgctggcagaatatgatttcagaaatgattccgtg
aatcctgatattaatatagatctgaaacctacagctgtcctcaggccctatcaagagaaa
agcctaaggaagatgtttggaaatgggcgagcaagatctggtgttattgtcttgccatgt
ggtgctggtaagtctctagttggtgtgactgctgcctgtactgtccgcaagcggtgtctg
gtcctcggtaattctgcagtgtctgtagagcagtggaaagcccaattcaagatgtggtcc
accatcgacgacagtcagatatgtcggttcacttctgatgccaaagacaaacccattggc
tgttctattgctatcagcacatactccatgttgggacacacgacaaaaagatcctgggaa
gcagagagagtaatggagtggcttaaaagtcaagagtggggccttatgatacttgatgaa
gtacatactatccctgcaaaaatgttcagacgtgtgctcactattgtacaagctcattgt
aaactggggctgactgctaccctggtcagagaagatgataaaattgttgacctgaacttc
ctgatcggaccaaagctctatgaagccaactggatggagctgcagaacagtggctacatt
gctaaagtccagtgtgctgaggtttggtgcccaatgtcacctgaattttacagagaatac
gtagctatcaaaacgaagaaacggatactgctgtacaccatgaacccaaataaattcaga
gcctgccagttcctgattaagtttcatgagcgacggaatgacaaaatcatcgtatttgct
gacaatgtgtttgcactgaaggagtatgcagtcaggcttgggaaaccctatatatatggt
cctactgcacaaggagaaagaatgcaaattctacagaacttcaagcacaacccaaaaatc
aacactattttcatttccaaggtaggggacacatcttttgatctgccagaagccaatgtt
ctgattcagatatcatcccatggtgggtctcgaagacaagaggctcaaagactgggacga
gtgctgagagccaaaaaaggcatggttgcagaggaatacaatgcctttttttattctctt
gtatcgcaagacactcaggagatggcatattcaacaaagcgacaacggtttcttgtagat
caaggttatagcttcaaggtaataacaaagcttgcaggcatggaagaagaagaactttca
ttttcatccaaagaagaacagcagcagcttctccagaaagtcctgcaagcatctgacctg
gatgctgaggaggaagtagttgctggagaatatggctcaaagtcagctcaggtgtcacgt
cgtacgggcacaatgagctctatgtcaggagcagacgatacagtttacatggaatatcac
tcttcacggagtaaggcatctgcaaataaacacatccatccgctatttaaacgcttccgg
aaatga
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integrated database retrieval system
