Charadrius vociferus (killdeer): 104288563
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Entry
104288563 CDS
T08577
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104288563 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvf04131
]
104288563 (VPS8)
Membrane trafficking [BR:
cvf04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104288563 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
Clathrin
zf-RING_11
Thioredoxin
zf_RING_Vps8_fungal
TPR_Vps41
zf-RING_2
zf-RING_UBOX
Beta-prop_WDR5
Beta-prop_WDR3_1st
WDR55
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
104288563
NCBI-ProteinID:
XP_009885687
LinkDB
All DBs
Position
Unknown
AA seq
1457 aa
AA seq
DB search
MSCAEEQKQITINSQELWEEMLCLKGLIVVDVFQAWCGPCKTVVDLFRKIRNEVGSDLLH
FAVGGELVAVVRGANAPLLQKTILEQLAVEKKVLEHGGEHVVIDDKEFDIPQVDTPPTLE
SILNETDDEEESFILEDPFLLNIDNTDAHSYDTSSVASSDSGDRTHLKRKKKLPDSLSLH
GSVIRLSLLKGISAQIVSAADKVDAGLPTAIAASNLIAVGTSHGLALIFDQNQALRLCLG
STAVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIK
FTDDPTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKVELRDHP
ITQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQNSVNPMLAF
CRGDVVHFLLVKRDDTGAIHVTKQRQLHLHYDLINFTWINSRTAVLLDSVEKLHVIDRQT
QEELETIEISEVQLVYNSSHFKSLATGGNVSEALALVGEKACYQSISSCGGQIFYLGTKS
VHVMTLRSWRERVDHLLKQERLTDALALAWSFYEGKAKAVVGLSGDTSKRKAVIADRMVE
ILLHYADRTLKKCPDQGKIQVMEQHFQDVVPVIVDYCLLLQRTDLLFNQIYDKMSENSVA
KGIFLECLEPYILSDKLMGITAQVMKDLLLHFQDKNRLENLEACIVHMDITSLDIQQVVL
LCWENHLYDAMIYVYNSGMNDFISPMEKLFKVIAPPLNAGKSLTDEQVVMGNKLLVYISC
CLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSTEGSVDEEVYPYVRTLLHFDTREFLNV
LALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPNNTLFV
NRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIQMAEKAEFYQICEF
MYERELRYDKIIGCYLRDPVRKEEVFNYIHNILSMPGYSAEEKQSVWQKALEHIEELLLL
SPCKAADLVAIHFSEQIENIIADLQDQFLIFQFLRSLLDPREGINQDLLHLPPCITEQFI
ELLCQYSPDQVLETLKVLEYCRLEETIQITQKHQLHEASSYLLEKKGDIHGAFLVMLERL
QSKLLMLTQDDESSAEPPLLENIEDTLMKTIALCQRNSHNLDQQQREALWFPLLEAMMSP
QKLSGSSQCQYSESLKSLTMQVLNNMAAFIALPSILQRILQDPVYGKGKLGEIQGLVLGM
LDTFNYEQTLLETTTNLLNHDLHWSLCNLRASVTRGLTPKQDYCCICLQQYKRRQESADE
IIVFSCGHLYHSLCLLSKECGTVTKGLMRWMCYKCNSRNKGGKLSENLSELKKGSGASLA
QASSESLLDPQQIQAFDQLCRLNRGASRLALLTELSRGHGGEKHGLLSVSHGDPATSSVF
QNENFQLHLAPPPLAED
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atgtcctgcgcagaggagcaaaaacagattaccatcaatagccaggagctttgggaagaa
atgctgtgtctcaaaggactcattgttgttgatgtgtttcaagcctggtgtggtccatgc
aaaaccgtagtggatcttttccgaaaaataaggaacgaagttggcagcgatctcctgcat
ttcgctgtgggaggagaattagtagctgttgtaagaggagcaaatgcaccattgctgcag
aagaccatcctggaacagctggcagtggaaaagaaggttttagaacatggaggagagcat
gtggtgatcgatgacaaagaattcgacattcctcaagttgatacccctccaacactggag
agcatcttaaatgagactgatgatgaagaagagtctttcattttggaggatccctttctc
ttgaacatcgataacacggatgcacactcctacgacacatcttctgtagcaagctctgac
agtggggaccggacacacctgaaaaggaagaaaaaactcccagattctctctcactccat
ggatcagttatacgactctcgcttctgaaaggaatttctgcccaaatagtatctgcggca
gacaaagtggatgctggcttgccaactgcaattgcagcatcaaatctgatagcagtgggg
acctcccatgggttagcgctgatatttgatcaaaaccaggctcttcggctgtgtctgggc
agcactgctgttggggctcagtatggggctatctctgcgctcagtatcaacaacgactgt
tcgaggctcctgtgtggatttgcaaaaggacagatcacaatgtgggatctggccagtggg
aagctgctacgatcaataacagatgcccacccaccaggaacagccattttgcacatcaag
tttacagatgacccgacgcttgcaatttgcaatgacagcggaggctccgtgtttgaacta
tcatttaagagggttatgggagtgagaacgtgtgaatctcgatgtctcttcagtggctca
aagggggaagtttgctgtattgaaccattgcatgcaaaagttgagctgagagaccatcct
atcacccagtactcgctgctggccatggcctctctaacaaagatactggttattggcctg
aagccatctctgaaagtgtggatgacttttccctacggtcgtatggatccttctagtgtc
cctcttctggcgtggcactttgtggctgtacagaactcggtgaaccccatgcttgcattt
tgtcgaggagacgtcgttcattttcttctggtaaagagagatgatactggtgcaatacat
gtcactaagcagaggcagcttcatctacactatgacctcatcaactttacttggataaac
tcacgcacagcagtgcttctggacagtgtggagaagctgcatgttatagatcgtcagacg
caggaggagctggagaccatagagatctcggaagttcagctagtctacaacagcagccac
ttcaaatcgctggctacgggaggcaatgtcagcgaagctctggcattggttggagagaaa
gcttgttatcagtccatcagcagctgtggtggtcagatcttttatcttggaactaagtct
gttcatgtcatgacattgagaagctggagagagagagttgatcaccttttgaaacaagag
cgtctcactgatgccctggctctagcttggtctttctatgaaggtaaagcaaaggccgta
gtaggcttgtctggggacacgagcaagcggaaagcagtcattgcagaccgaatggttgaa
atccttctccattacgctgatcgcactttgaagaaatgtcctgaccaaggaaaaatccag
gttatggagcaacattttcaggacgtggtgcctgtcatagttgattactgtctcttgctc
cagcgcacggatctattatttaaccagatatatgataaaatgagcgagaattctgtagct
aaaggcatctttctggagtgcttggagccatatatcttaagtgataagctgatgggaatc
acagctcaagtgatgaaagacttgctgcttcacttccaagacaagaacaggttggagaat
ttggaagcctgcattgtacacatggatatcaccagcttagacatacagcaggtagttctt
ctgtgctgggaaaaccatctctacgatgccatgatctatgtctataacagtgggatgaat
gacttcattagtcccatggagaagctgttcaaagtcattgctcctccactgaatgctggg
aagtctctcacagatgagcaggtggtaatgggcaacaagctgcttgtatatataagctgc
tgcttggcaggccgtgcatatccattgggcgatattcctgaagatctggtacctctggtt
aaaaatcaggtctttgaatttctcatccggctgcattcaaccgagggatctgtggatgaa
gaggtctacccttatgttcgtaccttgctgcactttgacactcgggaattccttaatgtt
cttgctctgacttttgaagactttaagaatgacaagcaagctgtggaatatcaacagaga
attgtggacatacttctgaaagtcatggtagagaattcggacttcaccccatcgcaggtt
ggctgtctctttaccttccttgcccgtcagctcgccaagcccaacaacacattgtttgtg
aacaggacgctttttgaccaggtccttgaatttctgtgcagtccggatgatgactcccgc
cattcggagaggcaacaggtccttttagagttgctccaggcaggagggatagtacagttt
gaagagagccgtcttatccaaatggcagaaaaagcagaattctatcagatttgtgagttc
atgtatgaacgagagcttcgctatgacaaaataattggctgttacctgcgtgatccagtg
agaaaggaagaagttttcaactatattcacaacatcctgtccatgcctggctacagcgct
gaagaaaagcagtcagtgtggcagaaagctttggaacatatagaggagctgctgttgctg
agcccatgtaaagcagccgacttggtagccattcacttcagtgagcagatcgagaacatc
attgcagaccttcaggaccagtttttaatcttccagtttctgcggagtctccttgatcca
agagaaggcattaaccaagacctgttacacttaccaccctgcatcacagagcagttcatt
gagctgctgtgtcagtacagcccggaccaggttttggagacacttaaagttctggaatac
tgcagactggaagaaaccatccagataacccagaaacatcagctccatgaagcttcttca
tatttactggagaagaagggagacatccatggtgcctttctggttatgcttgagcgattg
cagagcaagttgctgatgcttacgcaagatgatgaaagctcagctgaaccccccttgcta
gaaaacattgaagataccttaatgaaaacaattgccctttgccagagaaattcccacaac
ttagaccagcaacagcgagaggccctctggtttcccctgctggaggccatgatgtcccca
cagaaattatctggttcttcacagtgtcaatactctgaatctttgaagagtttgacaatg
caagtgctgaacaacatggctgcatttatcgctcttccttcaatcctgcagagaattcta
caggatccagtttatggaaaagggaaacttggagaaattcaaggacttgtcctgggaatg
ctggacacttttaactatgaacaaacccttttggagacaactacgaatcttttaaaccat
gatctccactggtccctgtgtaacctaagagcatctgtcactagagggcttaccccaaag
caggattactgctgcatttgcctacagcagtacaaaagaaggcaagaaagtgctgatgaa
atcattgttttcagctgtggccacttgtaccattcgctgtgtctgctgagtaaagagtgt
gggacggtaaccaaaggcctgatgaggtggatgtgctataaatgcaactcaaggaacaag
ggaggaaaactgagtgagaacttgtcagagctaaaaaaaggaagtggagcatccttggca
caggcaagttcagagtctctgttggatcctcagcaaatccaagcttttgaccaactctgc
cgactcaaccgaggagcctccagactagccctcctgacagaactgtctcgcggccatggc
ggtgaaaagcacgggctgctcagtgtttcccacggtgacccggccaccagcagtgtcttc
cagaacgagaacttccagctgcacctggccccccctccgctggctgaagactag
DBGET
integrated database retrieval system
