Charadrius vociferus (killdeer): 104288741
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Entry
104288741 CDS
T08577
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104288741 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvf03019
]
104288741 (BARD1)
04121 Ubiquitin system [BR:
cvf04121
]
104288741 (BARD1)
03036 Chromosome and associated proteins [BR:
cvf03036
]
104288741 (BARD1)
03400 DNA repair and recombination proteins [BR:
cvf03400
]
104288741 (BARD1)
Messenger RNA biogenesis [BR:
cvf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
104288741 (BARD1)
Ubiquitin system [BR:
cvf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
104288741 (BARD1)
Chromosome and associated proteins [BR:
cvf03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
104288741 (BARD1)
DNA repair and recombination proteins [BR:
cvf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
104288741 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_6
Ank_4
Ank
Ank_2
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
zf-C3HC4_2
zf-C3HC4
ANK_LRRK2
zf-C3HC4_4
Ank_KRIT1
zf-rbx1
zf-RING_UBOX
Siva
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
104288741
NCBI-ProteinID:
XP_009885898
LinkDB
All DBs
Position
Unknown
AA seq
859 aa
AA seq
DB search
MVDPACRPGASHAYVCLLTRSRVIMKTEKAKMVFAGVKQVRTCDNTDVIKAEYATIQISV
TVFHPVTLITLYGKGGGCVYGGTTSKTATCKKWEIGLNPEVLLDTQAEEKNTLETKSNSD
CAGVLREPVSLGQCEHVFCLSCVSDCVGTECPVCHVPAWVQDAQINRQLDNMIQLCSKLR
HLLGADTSDSTEDMSTPADSDSRKKNKKEEIKMWFSPRSRKIRCILNKSQPETKSHDLCQ
DTSSIYDFFPSPPHEKPSKPTEKPTQRQSKKMKKKCLADINKVWSLEKPEQQGGVVEKTD
KEKRVTICSQLVVLCTPEPNSPEETLQESIKEAASSKTAENVEILPQVKSLENKGNSEVA
CPAQVSKEKSCATETSLSIENETTPLKRGREQSRLPVNSLSKRPRRTERSIIGKSGRQAD
CLEELPQGCPISPATEHKTPVQISSSVLKVTDTVMKTSSSAVFEAVDSSSLSKSPSTPST
SKSGNQVGITRSPVLKSPGGNTIARRNYKGETLLHVASIKGDLAAVEELLKNGADPNVKD
NAGWTPLHEACNHGHKEVVELLLQYKALVNTTGYQNDSPLHDAAKNGHVSIVELLLLHGA
SRDAVNIFGLRPVDYAESEKMKAVLMLPVKNESFSLNRPSEALSPSQQRDGPLVILGSSL
SSEQQKLLIKLATVLKARKCTEFSSRVTHLVIPDVPMPSTVKCMMAVLTGCWVLKFEWVQ
ACLRTAVREQEEKYEIQGGPQRGRLNREQLLPKLFDGCYFYFLGSFNRHKKSDLVELVKA
AGGQILARQPKPDSDVTQTINTVAYHAESTSDQRFCTQYVIYDVSSKFKPEKIRQGKVWM
APSSWLIDCVMSFQLLPVK
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggtggatcctgcctgccgcccaggagcatctcacgcctacgtgtgtctcttaacaaga
tcaagagttatcatgaagacagagaaagccaagatggtgtttgctggggtcaagcaggtt
aggacatgcgacaacactgatgtaataaaggctgaatatgccaccattcaaatcagtgtg
acggtgtttcaccctgtgacactaattacactgtacgggaaaggcgggggctgcgtctat
ggaggtaccacctcaaaaacagcaacctgtaaaaagtgggagattgggctgaaccctgag
gtgctactggacacacaggctgaggaaaaaaacacccttgaaaccaaaagtaacagcgac
tgcgccggcgtcctgcgggagcccgtgtccctggggcagtgcgagcacgtcttctgccta
tcttgcgtgagtgactgtgttggcacagaatgcccagtttgccacgtgccagcctgggtg
caagatgctcagataaaccggcaactagataacatgattcagctttgcagcaaactgcgg
catctgctgggtgcggacacctcagattccacggaagatatgtccacaccagcagactca
gactctagaaaaaagaataagaaggaagagataaaaatgtggttcagcccaagaagtagg
aagattcgatgcatcctgaacaagagtcagcctgagactaaaagccatgacctttgtcaa
gacacgtcttcaatttatgatttctttccttcccctcctcatgaaaagccctccaagcca
acagaaaagccaacacagagacagagtaagaagatgaagaagaaatgtctagcagacatt
aacaaagtgtggagcttagagaagcctgagcaacaaggaggagttgtggagaagactgat
aaggaaaagcgtgtgaccatctgcagtcaactggtagtcctgtgcactccggaaccaaat
agccctgaagagacgcttcaggagtctataaaggaagctgcctccagcaaaactgcagaa
aatgtggaaatattgccccaggtaaaatccttagagaacaaaggtaacagtgaggttgcg
tgtcctgcgcaagtcagcaaggaaaaaagttgtgctacagagacatcactgtcaatagaa
aatgaaactacacctttaaaacgtggaagggagcaatccagacttccagttaattctctt
tctaaaagaccaagaagaactgagaggagtattattgggaagtcaggcaggcaagcagat
tgcttagaggagttacctcagggttgccccatctctccagcgactgaacacaagacacca
gttcagatttcttcctccgtattgaaagtcactgacactgtaatgaagacgagcagctct
gcagtctttgaagcagtagatagttcttcactttcaaaatctccctctacaccgtctact
tctaagagtggtaatcaagtaggaataacacgcagtcctgtgttgaagtcccctggtggt
aacacaattgccagacgaaattacaaaggagagactttgctccatgttgcttccatcaag
ggtgacttagcagctgttgaagagctgctgaaaaatggagcagatcccaatgtcaaagat
aatgctggctggacaccactgcacgaggcatgtaatcacgggcacaaagaagtggtggag
ctgttgctacaatacaaggcgttagtgaatactacggggtatcagaatgactctccactt
catgacgctgccaagaacgggcatgtgagcattgttgagctgctgcttttgcatggtgcc
tcccgtgatgcagttaatatatttggtctgcggcctgtagactatgcagaaagtgaaaag
atgaaggctgtgctaatgttgccagtgaagaatgaatcattttcacttaaccgaccctct
gaggcactgagtcccagccagcaaagagatggacctcttgttatactagggagcagtctt
agttcggagcaacagaaattgctgatcaaactagcaacagttctgaaggctcggaagtgt
actgaatttagcagcagagtaactcatcttgttatccctgatgttccaatgccaagtact
gtcaaatgtatgatggctgttctgactggatgttgggtcctcaaatttgaatgggtacaa
gcctgtctacgaaccgcagtacgagaacaagaagagaagtatgaaatccaaggtggccca
cagagaggccggctcaacagagaacagctgctaccaaagttgtttgatggatgctacttc
tattttttgggatctttcaaccgtcacaagaagagtgatcttgtggagttggtcaaagca
gcaggaggacaaattctggctaggcagccaaaaccagacagtgatgtgacgcagacaatc
aacacggtggcttaccatgcagaatctacttctgaccagagattttgcactcagtatgta
atctatgatgtgtcttctaaattcaagccagagaaaattcgtcagggcaaagtctggatg
gccccctctagctggctcatagactgtgtgatgtcatttcagctcctgcctgtgaaatga
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integrated database retrieval system
