Charadrius vociferus (killdeer): 104288752
Help
Entry
104288752 CDS
T08577
Symbol
SCAF8
Name
(RefSeq) LOW QUALITY PROTEIN: protein SCAF8
KO
K13191
RNA-binding protein 16
Organism
cvf
Charadrius vociferus (killdeer)
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvf03021
]
104288752 (SCAF8)
03041 Spliceosome [BR:
cvf03041
]
104288752 (SCAF8)
Transcription machinery [BR:
cvf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104288752 (SCAF8)
Spliceosome [BR:
cvf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
104288752 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
104288752
NCBI-ProteinID:
XP_009885909
LinkDB
All DBs
Position
Unknown
AA seq
1313 aa
AA seq
DB search
MTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA
PRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMXPPPVVTPVLP
STTAAMSNNTPGTPVTPVTPANVVQSLPDPWVSQIANTDTLAAVAQILQSPQGQQLQQLI
QTLQIQQQKPQPSLLQALDAGLVVQLQALTAQLTAAAAAANTLNPLEQSVSFNKKLMDRF
DFGEESEQNEEPKKETPTSQLPLVPESVNNSLFHQLAEQLQQQNLEHLRQQLLEQQQPQK
ASPEENQEGNFGSEHSASPSQGSSQQQFLEVETNVDDSMDIQQQDMDIDEGQDVAEEEIF
EQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYS
SERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESIN
MIPPRGCAYVCMVHRQDAYRALQKLSSGSYKIGSKIIKIAWALNKGVKTEYKQFWDVDLG
VSYIPWEKVKLDDLEGFAEGGMIDQETVNTEWETARSSEAAKENIQTTQSAAVDKSTVIT
TQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFPVTMSVPPPGYSAIPPPPFLRASFNPSQP
PPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLVQPPIPIAQETMKDVPFTSLVLPVGTVTS
NLVTPTLSAGSVFNPLPINKPESDEKGSHLTDLQISSSENNRSVQSDVSSSSGLVGGVPP
PSVSSSSGLTGEGQPPSVSSSSGLAGGVQPPSVSSNSGLGGGVQPPTVSSSSGLAGGVQL
PTVSSSSSLAGGVQPTSVSSSSGLMAGVQPPNVSSSSGLLAGVHPPSVSSSPGLLTGMQP
PSVSSSSGVLAGIQPPSVSSNSGLLIMPPPNVSSSSGLMGVPPPNISSSSGLLAMQHPAG
VQNMPHLRNGSQRXXXXXFPLIQPGMPPQRSIPPPAILDPSLHPPPRGPFPPGDIFNQTE
RPFGTPGRQNIDSISNPEKRLPLGGDNIQQAGDRDYRFPPVENRDNLNRPSPVDVRDSVG
RPPVDPREAIGRPPVDGREHFARPHVDMRENFGRPGIDNLGRREHFGFNSDKHWGQRGDY
DEREHHAFPIYGGPKGFHEDRERFRHVNYRFDSRSGPNWNRGFEQDAHRDFDDRRRPWER
QRDRDDRDFNFCREINGNRFGRDRMSNNWIPPPHPRVFEYFDGATSQRKADNMPQVNGEN
TETESQPPTAQVQDDPELYEKLTSSVEINKEKSDTEADIESEPVVESTETEGT
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgacacagatcaccaaagcagcaatcaaggctataaagttctacaagcacgttgtacag
agtgttgagaaattcattcaaaagtgtaaaccagaatataaggtacctggtctgtatgtc
attgactccattgtgaggcagtcccggcatcagtttggacaagaaaaggatgtatttgct
ccaagattcagcaataacatcatcagcactttccagaacttgtaccgttgtcctggggat
gacaagagtaaaattgttcgagtgctaaatttatggcagaagaataacgtgttcaagagt
gaaattattcagcctctcctggatatgnttcctcctccggttgtgacccctgtcttgccc
agcactacagctgctatgagcaacaatacaccaggaacacctgtgactccagttactcca
gcgaacgtggtgcagagtttacctgatccttgggtatctcagattgctaatacagatacc
cttgctgctgttgcacagattttacagagtcctcaaggccaacagcttcagcagttgata
cagacgctgcagatacagcagcagaaacctcagccttcactacttcaagccctggatgct
ggtcttgtcgttcagttacaggccctcacagcacagctcacagctgcagctgctgctgct
aacacacttaatccactggaacagagtgtctcttttaataagaagctgatggacaggttt
gactttggagaagaatctgaacaaaatgaagagcctaaaaaggaaactcccacttcccaa
ctgcctttagtaccagaatctgtgaacaactcactttttcaccaactagctgaacagcta
cagcaacaaaatttagaacatctcagacaacagcttctggagcaacagcagcctcaaaag
gcaagccctgaggagaatcaagaaggaaattttggttcagagcactctgcatcaccatca
caagggagtagtcaacagcagtttttagaagtggaaacgaatgtagatgattcaatggat
attcaacaacaggacatggatatagatgaaggacaggatgttgctgaagaagaaattttt
gaacaagaggagaagaaatcggctgttcgttcaagatcaagaactcgttcaagatctcgt
tcaaggtcaccaagaaaacgaaggtctagatcacggtctggttctcgtaagcgtaaacac
agaaaacgttcacgctcaagatcaagagaaaggaagagaaagtcatctcggtcatattcc
agtgaaagaagggctagggaaagggaaaaagaacgtcagaaaaagggattgcctcctata
cggtcaaaaacactaagtgtttgcagtactactctttgggtaggtcaagtagacaagaag
gctacacagcaagatttaactaacttgtttgaagaatttggacaaatagagtcaattaat
atgattcccccaagaggttgtgcttatgtctgtatggttcatagacaagatgcatatcgt
gctcttcagaaacttagttctgggtcctataaaattggatctaaaattattaagattgcc
tgggctttgaataaaggtgtcaaaacagaatacaagcaattctgggatgtggatctggga
gtttcatatataccttgggagaaagtaaagttggatgatttggagggctttgctgaaggt
ggcatgattgaccaggaaacagtaaatacagaatgggaaacagccagaagctcagaagct
gctaaagaaaatattcaaactacgcagagtgctgcagtcgataagagtacagttattaca
acgcagacggaagcttacacacaaccagtcactatgctgcagattccagtagctccagct
gtgcctgctgttagcttggttccacctgcatttcctgtcacaatgtcggtccctcctcct
ggttatagcgcaattcctcctccacccttcttgcgagcgagtttcaacccttcacagcca
cctccaggttatatgcctcccccagttccacctgtggtcccaccacctgttgtcccgcca
cctgttgtcccaccggttgttccaacacctttagtacagcctccaataccaattgcacaa
gagacgatgaaggatgtcccttttactagccttgttctaccagttggcacagttactagc
aatctagtcactccaacattatctgctggaagtgtttttaatcctttgccaatcaacaaa
ccagaatctgatgaaaagggatcacatcttacagaccttcagatttcttccagtgaaaac
aatagatctgtgcagagcgatgtctcgagtagctctggacttgttggaggagtgccgcca
cccagcgtctcaagcagttctgggcttactggagaagggcaaccacccagtgtctcaagt
agctctggacttgcagggggagtacagccacccagtgtttcaagcaactctggacttgga
ggaggagtgcaaccaccaactgtttcaagcagttccggtcttgcaggaggagtgcagctg
cctactgtttccagtagctcttctcttgctggcggagttcaaccaaccagcgtctcaagt
agctctggactcatggctggagtgcaaccaccaaatgtctcgagtagctcagggcttcta
gctggagtgcatccacccagcgtctcaagcagccctggccttctgacaggaatgcagcca
cccagtgtctcaagcagctcaggagttctggcaggaatacagccaccaagcgtctcaagc
aactctgggcttcttataatgccaccacccaatgtttcaagtagttctggacttatggga
gtgccaccaccaaatatttcaagtagttctggacttctggcaatgcagcatccagctggg
gttcaaaacatgcctcatttaagaaatggtagtcaaaggannnnnnnnnnnnngtttcca
ttaatccagccgggaatgccaccacaacgtagcattcctcctccagcaatcctcgatcca
tctcttcacccaccacctcgaggtccttttcctccaggagatatttttaatcaaacagaa
agaccttttggaacaccaggaagacaaaatattgatagcatttctaatccagagaaaaga
ctaccacttggaggcgataacattcagcaggcaggagacagagattatcgctttcctcca
gtggaaaaccgagataatcttaacagaccatctccagtggatgtcagagattctgttgga
cgaccaccagttgatccaagagaggctataggaaggcctccagtagatggaagagagcac
tttgcaagaccacatgtagacatgagagaaaattttggaagaccgggtatagataacctt
ggtcgaagagagcattttggtttcaattcagacaagcactggggacagcgaggagattat
gatgaaagagagcaccatgccttcccgatttatggtggccctaaaggcttccatgaagac
agagagaggtttcggcatgtaaactataggtttgatagtagaagtggtcccaattggaat
agaggatttgaacaagatgctcacagagattttgatgaccgcagaagaccctgggaaaga
cagagggatagggatgacagagattttaatttttgcagagaaattaatgggaacaggttt
ggaagagacagaatgtcaaacaactggatcccccctccgcatccacgggtttttgaatat
tttgatggggccacttcccaacgcaaagccgataatatgccccaggtaaacggtgaaaat
acagagacagaaagtcagccaccaactgcacaggtgcaggacgatccagaactttatgaa
aaactgacatcttccgtcgagataaacaaagagaagagtgacacagaagctgatatagaa
agtgaaccagtggtagaaagcacagaaactgaggggacataa
DBGET
integrated database retrieval system
