Charadrius vociferus (killdeer): 104288758
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Entry
104288758 CDS
T08577
Symbol
ARID1B
Name
(RefSeq) AT-rich interactive domain-containing protein 1B
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104288758 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cvf03000
]
104288758 (ARID1B)
03021 Transcription machinery [BR:
cvf03021
]
104288758 (ARID1B)
03036 Chromosome and associated proteins [BR:
cvf03036
]
104288758 (ARID1B)
Transcription factors [BR:
cvf03000
]
Eukaryotic type
Helix-turn-helix
ARID
104288758 (ARID1B)
Transcription machinery [BR:
cvf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
104288758 (ARID1B)
Chromosome and associated proteins [BR:
cvf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
104288758 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
ABC_ATPase
Motif
Other DBs
NCBI-GeneID:
104288758
NCBI-ProteinID:
XP_009885914
LinkDB
All DBs
Position
Unknown
AA seq
1822 aa
AA seq
DB search
MDPMVMKRPQLYGMGNNPHSQTQQSSPYPGQSYGPPGPQRYPVGMPGRAPAAMGGMQYPQ
QQIPPQYGQQGVSGYCQQGQQPCHNQQPQPQHLPPQAQYLSQAQQRYQAQQDMSQEGYGT
RSQPPMAPGKPNHEDLNLIQQERPSSLPVEVLASEDATFGHKDLSGSIDDLPTGTEATLS
SAVSASGSTSSQGEQSNPAQSPFSPHASPHLSGIPGGPSPSPVGSPVGSNQSRSGPISPA
SIPGSQMPPQPPGSQSESSSHPALSQSPMPQDRGFMAGIQRNPQMSQYGPQQTGPSMSPH
PSPGGQVHPGIGSFQQSNSSGTYGPQMSQYAPQGNYSRPPTYSGVPNTSYSGPGPGMGIN
ANSQMHGQGPSQPCGTMPLGRMPSAGMQSRPFPGNMSSMTPNSPGMSQQGGPGMGPPMPT
VNRKAQEAAAAVMQAAANSAQSRQGNFPAMNQSGIMGSSSPYTQPMNNSSGLMNPQAPPY
SMAPNMVNSSTAPMGLADMMTPGESKLPLPLKADGKEEGPPQPESKSKDSYSSQGISQPP
TPGNLPVPSPMSPSSASISSFHGDESDSISSPGWPKTPSSPKSSSSTTTGEKITKVYELG
NEPERKMWVDRYLTFMEERGTPVASLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRE
LATTLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKIQPPSPA
NSGSLQGPQTPQSTGSNSMTEVPGDLKPPTPASTPHGQMTPMQGGRNSAVSVHDPFSDVS
DSAFPKRNSMTPNAPYQQGINMPDMMGRMPYEPNKDPFGGMRKVPGSNEPFMTPGQMPNS
GIQDMYNQSPSGAMSNMSMSQRQQFSYGSGYDRRSDHGLGPEGSMAPPGQSNMVPSNSDP
SMYSPNRYPGQQRHEPYGQQFPGQGPPSGQPPYGGHQPGMYPQQQNYKRHMDGMYGPPAK
RHEGDMYNMQYGNQQQEMYNQYSNAYTGPDRRPMQGQYPYPYNRERMQGPGQMQQHGIPP
QMIGGPMQSSSSSEGPQQNMWPTRNDMPYPYQNRQGPGGPAQAPPYPGMNRTDDMMVPDQ
RINHESQWPSHVNQRQPSYMSSSASMQPITRPPQSSYQTPPSMPNHISRAPSPASFQRSL
ENRMSPSKSPFLPSMKMQKVIPTVPVSQVTGPPPQPPPIRREITFPPGSVEASQPVLKPR
RKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELL
VEYFRKCLIDIFGILMEYEVGDPGHKALDHKAAKKDDSQSLAEDTGKEENDECIDYFDEE
EEEGEDEKVEGEEKSIVFSTPGAIADPSERPKQASKFDKLPIKIVKKNNLFVVDRSDKLG
RVQEFDSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRKAPPPLNSPSKKKDLEGKGESEE
QQEKSITATIDDVLSARPGALPEDSNSGSQTESSKFPFGIHQAKSHRNIKLLEDEPRSRD
ETPLCTITHWQDSLAKRCICVSNIVRSLSFVPGNDTEMSKHPGLVLILGKLILLHHEHPE
RKRAPQTYEKEEEEDKGVACSKDEWWWDCLEVLRDNTLVTLANISGQLDLSAYTESICLP
ILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDLILATPPFSR
QEKLYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAIAVQKGSIGNLISFLEDGV
TMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVDENRSEFLLHEGRLLDISI
SAVLNSLVASVICDVLFQIGQL
NT seq
5469 nt
NT seq
+upstream
nt +downstream
nt
atggacccaatggtcatgaagagacctcagttgtacggcatgggcaataaccctcactct
cagacgcagcagagcagcccctaccccgggcagtcgtacggccctcccggcccccagcgc
tatcccgtgggaatgccgggccgagccccggcagccatgggaggaatgcagtatccacag
caacagataccgcctcagtatggccagcaaggtgtaagtggctactgccagcagggccag
cagccgtgccacaaccagcagccacagcctcagcatctgccaccccaggcacaatatctg
tcgcaggcccagcagaggtaccaggctcagcaggacatgtctcaggaaggctatggaacc
agatctcaaccccctatggccccaggaaagcctaaccatgaagacttgaatctaatccag
caggaaagaccatcgagcttaccagttgaagtcttggcctccgaggatgctacatttgga
cacaaggatttatctggatctattgacgacttgccgactggaactgaagcaaccctgagc
tcagctgttagtgcgtcaggctctacgagcagccaaggggagcagagcaaccctgcacag
tctccgttctcccctcatgcttctccacatctctctggcatccctgggggcccatcgcct
tcccctgtaggctctcccgttggaagcaaccagtcgagatctggtcccatttctccagca
agtattccaggcagtcagatgccaccgcagcctcctggcagccagtcagaatccagctcc
caccctgccttgagccagtcaccaatgccacaggaccgaggttttatggcaggcatacag
aggaaccctcaaatgtcacagtatggacctcagcaaactggaccttccatgtcaccacac
ccctcacctggaggccaggtgcaccctggaatcggtagctttcagcagagtaattcaagt
ggtacttatgggcctcagatgagccagtatgcaccacaaggaaactactccagaccaccg
acgtacagcggcgtgcccaacacaagttacagtggcccaggacctggcatgggtataaat
gccaacagtcagatgcatggacaggggccaagccagccttgtggtaccatgcccctggga
cggatgccatcggctgggatgcagagcagaccatttcctggaaacatgagcagtatgacc
cccaattctcctggcatgtctcagcagggaggccccgggatgggcccacccatgccaact
gtgaaccgtaaggcacaggaggcggctgctgcagtgatgcaggctgctgcaaactccgct
cagagcaggcaaggcaattttcctgccatgaatcagagcggtattatgggatccagctcc
ccctacactcagccgatgaacaacagctctggcttgatgaacccgcaggctcctccttac
agcatggcacctaacatggtgaacagttcaacagcacctatgggtcttgcagatatgatg
acacccggtgagtccaaactaccccttcctctcaaagcagatggcaaagaagaaggaccc
ccccagcccgagagcaagtcaaaggatagctacagctctcagggtatttctcagccccca
accccaggcaacctgccagtcccttccccaatgtccccaagctctgctagcatctcctca
tttcatggagatgaaagtgatagcattagcagcccaggctggccaaagactccatcaagc
cctaaatcaagttcctctaccacaactggagagaagatcacaaaagtctatgaactagga
aacgagccggagcgcaagatgtgggtggatcggtacctcacgttcatggaggagaggggc
acacctgtggccagtctgccagctgtgggcaagaagcccctggacctgttcaggctctat
gtctgcgtcaaagagattggaggtttagcacaggttaataaaaacaagaagtggcgtgag
ctggcaaccaccttgaacgttggcacttcaagcagcgcagccagctccctgaaaaaacaa
tacattcagtacctgtttgccttcgagtgcaagattgagcgaggggaggagccccctcca
gaagtctttagcactggcgatactaagaaacaacctaagattcagccgccatctcctgct
aattctggttccttgcaaggcccacagactccacagtctactggtagtaattccatgaca
gaagtgccaggcgatttgaagcccccaacaccagcatcaacacctcatggacagatgaca
cctatgcagggtggcaggaacagcgcagttagtgtgcatgatcccttttctgatgtaagt
gattcagcattcccgaagcgaaactccatgacgccaaatgcaccatatcagcagggaata
aacatgccagatatgatgggaaggatgccatatgagccgaataaagatcctttcggtgga
atgagaaaagtgcctggaagcaatgagcctttcatgacccctggacaaatgcctaacagt
ggaatacaagatatgtataaccagagtccatctggagcgatgtccaacatgagcatgagc
cagcggcagcagttctcttatggaagcggctatgacaggaggtcggatcatgggctgggt
cctgaaggcagtatggcaccacctggtcaaagcaacatggtgccttcaaacagtgaccca
agcatgtactctcctaatcgttaccctggccaacaaaggcatgaaccatatgggcagcag
tttccaggacaaggacctccatcaggacagccaccatatggaggacatcaacctggaatg
tatccacagcagcagaactataagcgacacatggatggcatgtatgggcctccagccaaa
cgccatgaaggggatatgtataacatgcagtatggcaaccagcaacaggaaatgtataac
cagtacagcaacgcttacacggggcctgacaggaggcccatgcagggacagtatccatat
ccgtataacagggagaggatgcagggcccaggacaaatgcagcagcatggaatacctccc
cagatgatcggcggccccatgcagtcgtcatcctccagcgaaggtcctcagcagaacatg
tggccaacacgaaatgatatgccttacccttaccagaacaggcaaggtccaggaggccct
gcacaggccccaccgtatccagggatgaatcgcactgatgatatgatggtgcctgaccag
aggataaaccacgagagtcagtggccttctcatgtcaaccaacgtcagccttcttatatg
tcatcctcagcctccatgcagcctatcactagacctcctcagtcatcctaccagacgcca
ccctctatgccaaaccacatctctagagctccaagtccagcatccttccagcgctctttg
gaaaaccgtatgtctccaagcaagtctcctttcctaccctccatgaagatgcaaaaggtt
atacccacagttccagtgtcacaggtcacaggacctccaccccaaccaccaccgatcagg
cgagaaattactttccccccaggctctgtagaagcatcccaaccagtcttaaaaccaaga
cgaaagattacctcaaaagatattgtaactcctgaggcctggagagtgatgatgtctctt
aaatctggtcttttggctgaaagtacctgggcgctagacactattaatattcttctgtat
gatgacagcactgttgctactttcaacctctctcagttgtctggatttcttgagctttta
gtagaatattttagaaaatgcctgattgacatttttggaatccttatggaatacgaagtg
ggagatccaggccacaaagcacttgatcacaaagcagccaagaaagatgatagccagtcc
ttggcagaggatactggaaaagaggagaacgacgaatgtattgactattttgatgaagaa
gaggaggagggagaggatgaaaaggtagaaggagaagaaaagagcattgttttttccact
cctggtgccattgctgatccaagtgagaggccaaaacaagccagtaagtttgacaagctg
ccaataaagattgtaaagaaaaataatctatttgttgttgaccgatctgacaaacttgga
cgcgttcaggaatttgatagtggacttctccactggcagcttggtggtggtgacacaact
gagcatatccagactcactttgaaagcaagatggagattcctccacgcaggaaagcccct
cctcccttgaactctccaagcaaaaagaaggacctcgaggggaaaggtgaatctgaggaa
cagcaagaaaaaagtataacggcaaccattgatgatgtcctctcagctcggccaggagca
ttgcctgaagactcaaactctggttcccaaacagaaagcagtaaatttccctttgggatc
catcaagccaaaagccaccggaatattaaactgctagaggatgagccaaggagccgagat
gagacgcctctatgcaccataactcactggcaagactccttggccaaacgctgcatctgt
gtgtcaaatatcgtccgtagcttgtcttttgtgcctggcaatgacaccgaaatgtccaaa
catccaggcttggtgctgatcctgggaaagttgatcctccttcaccatgagcatccagaa
agaaagcgagcaccgcagacttacgagaaagaggaagaggaggacaaaggggtggcctgc
agcaaggatgagtggtggtgggactgcctcgaggtcttgagggataatacattggtcaca
ttagccaacatttctgggcagctagacttgtctgcttacacagaaagcatctgtttgcca
attttggatggcttgctgcactggatggtgtgcccgtctgcggaggcacaggatcctttt
ccaaccgtggggcccaactcagttctttcgcctcagagacttgtgctggagaccctgtgt
aagctcagtatccaggacaataatgtggaccttatcttggccacccccccattcagtcgt
caggagaaactctacgctactttagttaggtacgttggggaccgcaaaaacccggtctgc
cgagaaatgtccatggcgctcttatcgaaccttgcccagggggacacattagcagcaagg
gcaatagctgtgcagaagggaagcatcggaaacttgataagcttcctggaggatggggtc
actatggcccagtaccagcagagccagcataacctcatgcacatgcagcctccacctctg
gagccacctagcgtagacatgatgtgcagggcagccaaggccttgctggccatggctaga
gtggacgagaaccgctcagagttccttttgcacgagggtcgtttgctggatatctcaata
tctgctgtcctgaactctctggttgcatctgtcatctgtgatgtactttttcagattggg
cagttatga
DBGET
integrated database retrieval system
