KEGG   Charadrius vociferus (killdeer): 104288862
Entry
104288862         CDS       T08577                                 
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
cvf  Charadrius vociferus (killdeer)
Pathway
cvf03420  Nucleotide excision repair
cvf04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cvf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    104288862 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    104288862 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cvf04121]
    104288862 (DDB1)
   03400 DNA repair and recombination proteins [BR:cvf03400]
    104288862 (DDB1)
Ubiquitin system [BR:cvf04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     104288862 (DDB1)
DNA repair and recombination proteins [BR:cvf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      104288862 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      104288862 (DDB1)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 104288862
NCBI-ProteinID: XP_009886036
LinkDB
Position
Unknown
AA seq 1151 aa
MDQGGSIPMSRDPLLGWRGKGDTAPKAEGDKGHFTSAEDLNLLIAKNTRLEIYVVTAEGL
RPVKEVGMYGKTAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQ
DRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKF
LYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGA
IIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEE
QMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVA
METFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKG
LWPLRSDSHRETDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLI
QITSASVRLVSQEPKALVSEWKEPNGKNISVASCNSNQVVVAVGRALYYLEIRPQELRQI
SCTEMEHEVACLDITPLGDTNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPR
SILMTTFESSHYLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNV
FACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQK
LHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSTSK
LFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYF
IVGTAMVYPEEAEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVR
LYEWTAEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDF
NPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCH
GSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIE
HSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDL
IKIVEELTRIH
NT seq 3456 nt   +upstreamnt  +downstreamnt
atggaccagggtgggagcatccccatgagcagggaccccctcctggggtggaggggaaag
ggggacactgcccctaaggcagagggggacaaaggccacttcacctcggcagaggatttg
aacctgctgatcgccaagaacacgcgactggagatctatgtggtgacagcggaggggctg
cggcccgtcaaggaggtggggatgtatggcaagacagccgtcatggagctcttccgcccc
aagggggagagcaaggatttgctgttcatcctgacagccaagtataacgcctgcatcctc
gagtacaagcagaacggggacagcattgatattataacccgtgctcatggcaacgtgcag
gatcgcatcggccgtccctcagagactggcataattggcatcattgacccagagtgccgt
atgatcggcctgcggctctacgatggcctcttcaaggtcattcccctggaccgggagaac
aaggagttaaaggcttttaacatccgcctggaagagctccaagtcatcgatgtgaagttt
ctctatggctgtcaggctccgaccatctgcttcgtctaccaggaccctcagggtcgccac
gtcaagacgtacgaggtgtccctgcgcgagaaggagttcaacaaaggtccttggaaacag
gagaacgtagaagctgaagcctccatggtcattgcagtgccagagccttttggaggtgcc
atcatcatcgggcaggagtctatcacctatcacaacggagataaatatctagctatagct
ccacctatcatcaaacaaagtacgattgtgtgccacaaccgtgtggatcccaacgggtcc
cgttacttgctgggggacatggaaggccgcctcttcatgctgctcctggagaaggaggaa
cagatggacggcactgtcaccttgaaggacctgcgcgtggaactgctcggcgagacatcc
attgcagagtgcttgacctacctggacaatggagttgtgtttgtcggctctcggcttggg
gattcccagcttgtgaagctcaacgtggacagcaacgagcagggctcctatgtagtggct
atggagaccttcaccaacctcggtcccatcgtcgacatgtgcgtggtggacctggaaaga
caaggccaagggcagctggtcacgtgctcgggtgcatttaaagaaggttcgctgcgcatc
attcggaacggcattgggattcatgagcacgccagcattgacttgccggggattaaaggc
ttgtggcccctgaggtcagactctcatcgtgaaacggacaatacgttggtgctgtccttt
gttggccagaccagggtccttatgttaaatggagaggaagtagaagagacggagctcaca
gggtttgtggatgatcagcagactttcttctgtggcaacgtggcacatcagcaattgatc
cagatcacctctgcctctgtaagactggttagtcaggagcccaaagccctggtgagcgag
tggaaagagcccaatggaaagaacatcagcgtggcttcctgtaacagtaaccaggtagtg
gtggctgtgggacgagccctgtactacctggagatccgaccccaggagctcaggcagatc
agctgcacagaaatggagcatgaagttgcctgcctggacatcacccccttgggggacact
aacggcatgtccccgctgtgcgcgatcgggctctggaccgacatctctgcccgcatccta
aagctgccttcgtttgaactgctgcacaaagagatgctgggaggagaaattatccctcgc
tccatcctgatgacgaccttcgagagcagccattaccttctgtgtgccctgggggacgga
gctctcttctactttgggctcagcctcgagacaggtttgctgagtgaccgaaagaaggtg
acccttgggacccagcccaccgtcctgaggactttccgctctctgtccaccaccaacgtg
tttgcctgctccgaccgccccaccgtcatctacagcagtaaccacaagctggttttctcc
aacgtcaacctgaaggaagtgaactacatgtgtcccctcaactcggatgggtatcccgac
agcttggcgttggccaataacagcaccctgacaattggcaccatcgacgagatccagaag
ctgcacatccgcacggttcccctctacgagtcgcccaggaagatctgctaccaagaggta
tcgcagtgtttcggcgtgctctcaagtcgtatcgaggtgcaagatgccagcggaggcacc
actgcgctcagaccgagcgccagcacccaggccctgtccagcagcgtgagcaccagcaaa
ctgttctccagcagcacagcaccgcacgagacctccttcggagaggaggtggaggtgcac
aacctgctcatcatagaccagcacaccttcgaagtgcttcatgctcaccagttcctgcaa
aacgagtacgccctcagcctggtctcctgcaagcttggcaaagatccgaacacctacttc
atcgtgggcactgccatggtatatcccgaggaggcagagcccaaacagggccgcatcgtc
gtcttccactactctgacgggaagctgcagagcctggctgagaaggaggtcaaaggggct
gtgtattccatggtggagttcaacgggaagctgttagccagcatcaacagcacggtgcgc
ctgtatgagtggacggcagagaaagagctacgcacggagtgcaaccattacaacaacatc
atggcgctctacctgaagaccaagggagacttcatccttgtgggagatctcatgcggtct
gtcctcctccttgcctacaagcccatggaaggaaacttcgaggagattgcccgggacttc
aatccaaactggatgagtgccgtggagattctggacgacgacaacttcttgggagcggag
aacgctttcaatctgtttgtgtgccagaaggacagcgcggccacgaccgatgaggagcgc
caacacttgcaggaggtggggctgtcccacctgggagagttcgtcaatgtcttctgccac
gggtctctcgtcatgcagaacctgggcgagacatccacgccaacgcagggctcggttctt
tttggcacagtcaacggcatgattggactggtgacctcgctgtcggagagctggtacaac
cttctcctggacatgcagaacaggctgaataaagtcatcaagagcgtgggcaagatcgaa
cactccttctggagatcgtttcacaccgaacggaagacagaaccggctacgggcttcatc
gacggtgacctgatcgaaagctttctggacatcagcaggcccaagatgcaggaggtggtg
gcaaacttgcagattgatgatggcagcggcatgaagagggaggccaccgtagacgacctg
ataaagatcgtggaggagctgacccggatccattag

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