Charadrius vociferus (killdeer): 104288873
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Entry
104288873 CDS
T08577
Symbol
CIITA
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
104288873 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cvf01001
]
104288873 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cvf04054
]
104288873 (CIITA)
Enzymes [BR:
cvf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
104288873 (CIITA)
Protein kinases [BR:
cvf01001
]
Serine/threonine kinases: Other
TAF1 family
104288873 (CIITA)
Pattern recognition receptors [BR:
cvf04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
104288873 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
DUF249
Motif
Other DBs
NCBI-GeneID:
104288873
NCBI-ProteinID:
XP_009886048
LinkDB
All DBs
Position
Unknown
AA seq
962 aa
AA seq
DB search
MRSAPQDDSKKQIMDSAFVSENGYLDLLHSDIDPLHLYTLLDPKSSGNEDGDFSADPEVD
ASNYDQFNNMDFLCTMENAENGDELYLCSNTVEAYARIAELAEYVLKDQQEKQVEDTFAG
NLILDEMAAENTEKFTDIRMQKCHKRTFLGSAEGCSEASEPKYKKIVEVPAVSAGNGSFL
AMPLISHPAGSTSPTNQHVSFSVPATNALERSFIIPGSSAPECLPVSVKRSQENTGFADP
PQQILNFVLGNGTSDVMIYPVLTSSTDSLISPSFPVSLCGLEMFKDIRVPVVPSEETFKR
PKPVEAFCTSLMDYFQDVCKSVAMEREVTLEHLFIDGTLVQSQTETKTGKNNVKAMEKEL
VTCSLQGKEKAALRRSQIFQILGKSILVQKICQDWSNGEFSQFEFVFWFDCKQISLPEKQ
YSLKDLLLEFFVKPQEGSKEIFEYILQNPAKVLLVFDGFEGLHDHENLPRCSASQPEKDL
CSIKELLSGLIQKKILNGCTLLLTARPKDKVYQYVSKVDKTIEIVGFSPQQRELYITKYF
EGLPYCDNALKLIKESEYLFSHCYSPLMCRLVCLLCEAVLEMGEKSLPSTLTTAFLKLVQ
QKIIPTQTDVTAMQNQESLATLARIAWYLGEKHQSAMKSDLLPSKEVKEFALKYGFFLPF
AFPRHSDSGEEEFGSTFSDCVTQNFLGALHLMLAEEIKDKSLTKYLSFPSKKKKPYNWLD
LVPRFLAGLWFLQDDPYFCSLSNKDVKQSTKKQKTLLKYIRKLQINELCPERLLDLLHCI
YETQSNYLLQHVALRLKPDLSFLGIVLTPPDIHVLHYILKRSRKEFSLDLRNSSIDMQGL
KDLIGLKNVASFRASLSDTVRLWKSLEQTKDYELLRASTEKFVLDPFKAKTMKDVSDLSD
LVEMQEKMINCVRDASGCSSYEIPAIKNLRKLEFALGPVCGLQGFLKLVEILAAFPSLRH
LE
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgcgttctgctccacaagatgacagcaagaaacaaatcatggattcagcatttgtgtct
gaaaatggatatcttgatttgctgcacagtgatatcgatccattgcatctgtatactctc
cttgatcctaagtcatctggaaatgaagatggtgacttctctgcagatcctgaagttgat
gccagcaactatgatcagttcaataatatggatttcctgtgtacgatggaaaatgctgaa
aatggggatgaattgtatctctgttccaacactgtcgaagcttatgctagaatagctgaa
ttagcagaatatgtgctcaaagatcagcaggagaagcaggtggaagacacttttgcaggg
aaccttattttggatgaaatggctgctgaaaatactgagaaatttactgacataaggatg
cagaaatgtcacaaacgaaccttcttgggctctgcagagggttgctctgaagcttcagaa
cccaaatacaagaaaattgtggaagtccctgcagtgtctgcagggaatggaagtttttta
gctatgcctctcatcagccatccagctggctccacctcaccaactaaccagcatgtgtcc
ttttctgttcctgctaccaatgcgttggaaagaagtttcataattcctggatcttcagca
ccagagtgtctacctgtcagcgtgaaaaggagccaagagaatacaggttttgcagatcct
cctcagcagatactgaacttcgttcttggaaatggcacatcagatgttatgatatatcca
gtgctgacttcttccacagactcattgatatctccaagttttccagtgagtttatgtggt
ttagaaatgttcaaagacatccgagttcccgtagttccttctgaagaaactttcaaaaga
ccaaagccagtggaagctttttgtacatcacttatggattatttccaggatgtgtgcaaa
tctgtggccatggagcgtgaagtaactcttgagcacctatttattgatgggacacttgtt
caaagccaaactgaaaccaagactgggaagaataacgtaaaagcaatggaaaaggagctg
gtaacttgcagtctgcaagggaaggaaaaggcagcccttagaagaagccaaatatttcaa
atcctgggcaaaagcattcttgttcagaagatctgccaggactggtccaatggagagttt
tctcagtttgaatttgtattttggtttgactgcaaacaaataagcttgcctgagaagcaa
tacagcctgaaggatctgcttcttgaattttttgtaaaacctcaagagggaagcaaagag
atctttgagtatatattgcaaaatcctgctaaagtccttctggtttttgatggttttgaa
gggttgcatgatcatgagaatcttcctcgttgctcagccagccagcctgaaaaagacttg
tgcagtataaaggagctcctttcaggtctcatccaaaaaaaaatactcaacggttgtact
ctattacttacagcaagaccaaaagacaaggtgtaccagtatgtgtccaaagtggataag
actattgaaatagtaggattttcccctcagcagagagaattgtacataaccaaatacttt
gaaggattaccctactgtgataatgcactgaaattaatcaaagagagtgagtacttgttc
agtcattgttacagccctcttatgtgtagacttgtttgtttgctctgtgaggcagtactt
gaaatgggagagaaaagccttccttcaactcttactacagccttcctgaaacttgttcag
caaaagataatacctacacaaacagatgttacagccatgcaaaatcaagaaagtcttgct
acgctggcccgtatagcctggtatcttggagaaaagcaccaaagtgccatgaaaagtgat
cttcttccttctaaggaagttaaagagtttgctctgaaatacggatttttcttgccattt
gcattccccaggcattcagatagtggagaagaggaatttgggagcacattctctgattgt
gtcactcagaatttcttgggtgcgctgcaccttatgttagcagaagagatcaaggataaa
agtctaacaaagtacctgtcctttccatccaagaagaaaaaaccttataactggttagat
ttagtgcctcgatttttagccggattgtggttcctccaggatgacccctacttctgctcc
ctttcaaataaggatgtaaaacaatcaaccaagaagcagaaaacactcttgaaatatatt
agaaagctgcagataaatgaactctgtccggagaggttactcgatcttttacattgtatt
tatgaaacacaaagcaattaccttttgcagcatgtggcattaaggctcaagccggacctg
tcttttctgggcatagttcttacaccacctgacatccatgtactgcactatattttaaaa
aggtcaagaaaagagttttccttggatttgcggaacagcagcattgatatgcaagggcta
aaagacttgattggcctaaagaacgtggcatcgttcagggcctccctcagtgatacagtc
aggctctggaaatctttagaacaaacaaaagactatgaactgctgagggcatcaacagag
aaatttgttcttgatccctttaaggcaaagacaatgaaggacgtcagtgacctttcagac
cttgtagagatgcaggagaagatgatcaattgtgtgcgagatgcatctggttgcagcagc
tatgaaattcctgccatcaaaaacctcagaaaactagaatttgcgctgggtccagtatgt
ggccttcagggattcctaaaacttgtggaaattcttgcagcatttccatcgcttcgtcat
ttagagtga
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