Charadrius vociferus (killdeer): 104289134
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Entry
104289134 CDS
T08577
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104289134 (COL27A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cvf00536
]
104289134 (COL27A1)
Glycosaminoglycan binding proteins [BR:
cvf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104289134 (COL27A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
GH131_N
Laminin_G_3
RVT_thumb
Motif
Other DBs
NCBI-GeneID:
104289134
NCBI-ProteinID:
XP_009886342
LinkDB
All DBs
Position
Unknown
AA seq
1748 aa
AA seq
DB search
MEPESEPVSRLRATAAGRGGFCFLWTVLCFTWFLGFTQGNSEDVDVLQRLGLSGKRPSSG
WSSSRTVPQGVIPFKSGVIFTQRARVEAPVSTILPAGSSTDLLLVLSLCSHRINNAFLFA
VKSKKKKLQLGVQFVPGKIIVYVGHKRSVYFDYNVHDGQWHNMAIDIRGQTVTLFTSCGK
RRVHADLHFKKDEALDPHGSFLFGKMNQHSVQFEGAICQFDIYPSAKAAHHYCKYLKKQC
RQADTYRPNLPPLIPLLPRDPSASPSTPQHMEPSLQGLKNLTTAAPSLEFGRVTAPLKTR
GSGATTVSLVSSPPSLPRLTTKATKVTVAPSPVPPSTETQPPTRSLPRGTVTIPLRVSRP
TSSTRVEKTSLPTAKKAPPTSQSPATASRKESKQETKKRINQKPTIEPSEAPSTVKPMRR
MTDNTTSNVHLVTLKQTPQNPSNGPIPKKHVPSPTRKVDPSNVPLVYTKPPPGSARPVSR
ARAQAFNLTTPAATDGYQIFDPLGPTPFPFLLEYPGVKGERGPQGPPGLPGLPGPPGKRG
SRGPPGPHGNPGSPGPPGLKGQKGDPGLSPGKARNGQKGDVGLPGLTGFPGPPGRKGYKG
YPGPPGHPGDQGERGPDGSPGAKGYPGRQGLPGPIGDAGPKGSRGYIGLPGLFGLPGADG
ERGIPGVPGKRGKMGRPGFPGDFGERGPPGIDGNPGELGAPGPPGVLGLIGDMGSVGPIG
YPGPKGLKGLMGNPGEHGLKGDKGDQGGAGVPGDIGFQGDKGSQGLPGVPGARGKAGPLG
KVGDKGPVGFPGPPGPEGFPGDIGPPGENGPEGLKGKPGARGLPGPRGLLGQEGDEGPLG
PPGVPGPEGRSGRKGFPGRPGPDGPKGEPGNRGRPGKVGEQGLMGFIGPVGEPGIVGEKG
DRGSVGPPGPPGVKGSMGHPGTPGGVGFPGIPGPTGPAGVRGAPGIRGMKGRRGARGPDG
PVGEPGSRGVKGRPGEPGKLGPDGLQGKMGETGETGARGFPGIQGPSGPPGAKGAPGDPG
PQGPQGPPGPLGEIGHKGPPGSMGQPGLAGEPGMKGDPGQLGVPGEQGLVGQRGESGLEG
DSGPPGPDGVKGDKGEQGLEGEKGEKGNEGLKGKEGPPGYPGITGVRGPEGKPGKQGEKG
KPGQKGSKGYQGQLGETGSPGKEGPKGNQGPKGSRGTLGPMGAPGRMGAQGEPGLKGYQG
HAGPPGPIGPPGPKGEKGEQGDDGKVEGPQGPPGDRGPVGDRGDRGEPGDPGYPGQDGLD
GERGKPGQQGLPGDAGPPGQPGAKGSKGDVGQKGKQGARGNAGSRGSPGILGLPGPRGVV
GRQGQEGAPGADGVPGKDGVPGMLGEQGDDGEEGVTGMSGKRGNPGIPGLPGAQGPPGFK
GERGLPGQTGQTGKRGSSGGTGLPGTPGNPGPKGQPGDFGEAGFPGIAGMFGPKGPPGDL
GFKGIQGPRGPPGLMGKEGIIGPLGIQGPMGSLGPKGDKGSRGEMGLQGPRGPPGPRGHP
GPPGLPGIPASFQQDGFGAAFRTLIDSNTALKTEGYQHPDLFMLDHGGEIFKTLHYLSNL
IQSIKRPLGTKENPARICRDLMNCEQKMNDGIYWIDPNLGCSSDTIQVICNFTNGGQTCL
SPITVSKLDFDIGRVQMNFLRLLSSEVVQHITIHCLNTSVWREGSSEKPLEKAVRFKAWN
GQMFEADGQLRPEVAADDCKIKDGRWHRTLFSFRTQDPQQLPIVNIYNLPPSEPGKQYHL
EVGPVCFL
NT seq
5247 nt
NT seq
+upstream
nt +downstream
nt
atggagccggaatcagagccggtctccagactcagagctacagcagcaggcaggggggga
ttctgctttctctggactgtattgtgttttacctggttcctgggattcacacagggaaat
tctgaagatgtggacgttcttcaaagactgggcctgtcagggaaaaggccatcgagcgga
tggtcctcatcgcgtacagttcctcaaggggtcattcctttcaaatcaggggtcatcttc
actcagcgagcacgtgtcgaagcaccggtcagcaccatcctccccgcaggctccagcact
gacctgctcctagtgctgagcctctgctcccaccgcatcaacaatgcttttctctttgct
gtcaagagcaaaaagaaaaaactgcagctgggggtccagtttgtgcctgggaagatcata
gtgtatgtgggccacaagcgctctgtatattttgattacaatgtccatgatggccagtgg
cacaatatggccatcgatatccgtggccagacagtcactttatttacttcttgtgggaag
cgcagagtacatgcggatttgcattttaaaaaggacgaggcattggatccacatggatct
ttcctctttgggaagatgaaccagcactccgtgcagtttgaaggagccatctgccagttc
gatatttatccttccgccaaggcagctcatcattactgtaaatacctgaaaaaacagtgc
aggcaagcagatacctaccggccaaacctgccccccctcatccccctcctgcccagggat
cccagtgcctccccgagtaccccacaacatatggagccctcgctgcagggtctgaaaaac
ctgaccactgctgccccatccttggagtttggcagggtcactgcgcccctcaagactcgg
ggttcaggtgcaacaactgtctcattggtgtcatccccaccatcgctgccaagactgaca
accaaagccacaaaggtcacagtggccccatctcctgttccaccaagtactgaaacacag
ccacccacccgttcgctccctcgggggacggtgacaatccccctcagggtgtctcggccc
acttccagcacacgtgtggagaagacttcccttcccactgccaaaaaggccccgccgaca
agccagagccctgccacagccagcaggaaggagtccaagcaagagaccaaaaagaggatc
aaccaaaaaccgaccattgagccctccgaagcacccagtactgtaaagccaatgaggagg
atgactgataacacaaccagcaacgttcaccttgtcaccctaaagcaaaccccacagaac
ccgagcaatgggcccattccaaagaagcatgtgccgtcccccaccaggaaagtggatccc
agtaatgtccctctggtgtacaccaaaccgcccccggggtctgcccgtcccgtctccaga
gccagggcacaggccttcaacctcacaaccccagctgcgactgatggctatcagatcttt
gaccccctcggacccactccgtttccatttttactggaatatccaggcgtgaaaggagag
agaggacctcagggtccaccaggtctgccgggcttaccaggaccacctggcaagagaggt
tcccgaggtcccccaggtccccacggaaaccctggctcacctggccccccaggcctgaaa
ggtcagaagggtgatcctgggctgtcgcctggaaaagctcgcaacggacagaagggagac
gtgggcttacctggtttgactgggttccctggaccacctggtagaaagggatataaaggc
taccctggaccaccaggtcaccctggagaccagggcgaacgaggaccagacggcagtcca
ggtgccaaaggttatcctggcaggcagggtttacctggccccataggggacgctggtcca
aaaggcagtcggggatatattggtctcccaggattatttgggctaccaggggctgatgga
gaacgagggatccctggagttcctgggaagaggggcaagatgggtaggccgggttttcct
ggtgattttggggaacgaggacctccaggcattgatgggaacccaggagaattgggagcc
ccaggtcctcctggagtccttggactcattggtgacatgggctctgttggaccgataggc
tatccaggaccaaaaggcttaaaggggctgatgggaaaccctggagaacatggactgaaa
ggtgataagggtgatcagggaggagcaggtgttccaggagatatcggcttccaaggagac
aagggcagccagggtttgcctggggtccctggggcacgagggaaagcaggacccctggga
aaagtcggtgacaaaggtccagtcgggtttccaggaccacccggccctgagggcttccca
ggtgacattggcccaccaggagaaaatggtcctgaaggcctgaagggaaagccaggagca
cgaggcttacctgggccgagggggctgcttggacaagagggagatgaaggacccttagga
ccaccaggagtccctggtccagagggtcgatctggccggaagggatttccaggaagacct
ggtcctgatggtccaaagggtgagccaggaaaccgcggccggccggggaaagttggtgag
cagggtctaatgggttttattggtccagtgggggagcctggaatagtgggagaaaagggt
gaccgtggctcagtgggacccccaggccctccaggagtcaaggggtcgatggggcacccc
gggacaccaggaggagtgggttttcctgggatccctggaccaacaggtccggcaggagtc
cgtggtgcgccagggataagagggatgaaaggccgcaggggtgccagagggcctgatgga
ccagtaggcgagccggggtcacgaggtgtcaagggccgaccaggggagccaggcaagctg
gggccagatgggctgcaggggaagatgggtgagactggggagacaggagcacgcggcttc
ccaggtatccaaggaccttctggacctccaggagcaaaaggggctccaggcgacccgggt
ccacaaggaccacaggggccacctgggcctttgggagaaattgggcataagggaccgcct
ggctcaatgggacaacctggccttgcaggtgaacctggcatgaagggtgatcctggccag
ttgggagtccctggagagcaaggcctcgttggtcaaagaggagaatcggggctggaaggg
gacagcgggccacctgggccggatggtgtcaagggagacaaaggagagcaaggtctggaa
ggagagaaaggagaaaaaggcaacgaaggactgaagggaaaagaagggcctcctggatat
cccggcatcacaggtgtccgaggaccagaagggaaaccaggaaaacaaggggaaaagggc
aagcctggccagaagggcagcaagggctaccaggggcagctcggcgagacaggatctcca
gggaaggaggggccgaagggcaaccaaggccctaaaggatcccgaggtaccctaggacct
atgggtgctccaggaagaatgggtgctcaaggggaacctggcttaaagggttaccaggga
catgcaggaccaccagggccaattggaccaccagggccaaagggggaaaagggagaacaa
ggtgatgacgggaaggtagaaggcccacagggaccacctggagacagaggccccgttggt
gacagaggtgatcgaggggagcctggagaccctggttatcctggtcaagacgggcttgat
ggagaaagaggaaaacctggacagcaaggcttacctggggatgctggaccaccaggccag
ccaggagcaaagggatccaaaggtgatgtgggtcaaaaaggaaagcaaggagcacggggc
aatgcagggagcagaggctcaccgggcatccttgggctaccaggtcctcgaggagtggtg
ggacggcagggtcaagagggtgcccctggagcagacggagtgcctgggaaggatggcgta
cctgggatgctgggagagcagggtgatgatggggaagaaggtgtgacagggatgtcaggc
aaaagaggcaaccctggcataccgggactccctggggcacaaggaccaccaggattcaag
ggtgaaagaggattgcctggacagactggccaaacagggaagcgaggatcatcaggagga
acgggccttccagggacccctggcaatccaggacccaaaggacagccgggagactttggc
gaggcaggatttccagggattgcgggcatgtttgggccaaagggccccccaggagacctg
ggtttcaaaggcattcagggaccacgtgggccgcctggtctcatgggaaaagaaggaatt
attggtccgcttggcattcagggtcccatgggaagcctagggcccaagggagacaaaggc
agccgcggagaaatgggtcttcaaggtccaagaggtcctccaggcccacgaggacaccct
ggccctccgggactgccaggaattccagcctcatttcaacaagatggctttggggcagct
ttccggacactaatcgactcaaacaccgcgctcaagacagagggttaccaacatccagac
cttttcatgctggaccatggaggggagatctttaagactctacactacctcagcaacctc
attcagagcatcaaaagacccctgggaaccaaggaaaaccctgcacgcatctgtcgagac
ctcatgaactgtgaacagaagatgaatgacggtatctactggattgacccaaatcttggc
tgttcctcggacaccatacaggtcatctgtaacttcaccaatggtggtcagacgtgtctc
agccccatcaccgtctccaagctggattttgacatcggtagagtccagatgaacttcctc
cgcctcctgagctcagaggtggtgcagcacatcaccatccactgcctgaacacctccgtc
tggcgggaaggctcatccgagaaacctttggaaaaagccgtgcgcttcaaggcatggaac
gggcagatgtttgaggcagacggacagctcaggccagaagtggcagctgatgattgcaag
atcaaggatggacgctggcatcggactctcttttcgtttcggacgcaggaccctcagcag
ctgccaattgtcaacatctacaaccttcccccatccgagccaggaaagcagtatcacctc
gaggtcggccccgtgtgcttcctttga
DBGET
integrated database retrieval system