KEGG   Charadrius vociferus (killdeer): 104289134
Entry
104289134         CDS       T08577                                 
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
cvf  Charadrius vociferus (killdeer)
Pathway
cvf04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cvf00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    104289134 (COL27A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:cvf00536]
    104289134 (COL27A1)
Glycosaminoglycan binding proteins [BR:cvf00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   104289134 (COL27A1)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 GH131_N Laminin_G_3 RVT_thumb
Other DBs
NCBI-GeneID: 104289134
NCBI-ProteinID: XP_009886342
LinkDB
Position
Unknown
AA seq 1748 aa
MEPESEPVSRLRATAAGRGGFCFLWTVLCFTWFLGFTQGNSEDVDVLQRLGLSGKRPSSG
WSSSRTVPQGVIPFKSGVIFTQRARVEAPVSTILPAGSSTDLLLVLSLCSHRINNAFLFA
VKSKKKKLQLGVQFVPGKIIVYVGHKRSVYFDYNVHDGQWHNMAIDIRGQTVTLFTSCGK
RRVHADLHFKKDEALDPHGSFLFGKMNQHSVQFEGAICQFDIYPSAKAAHHYCKYLKKQC
RQADTYRPNLPPLIPLLPRDPSASPSTPQHMEPSLQGLKNLTTAAPSLEFGRVTAPLKTR
GSGATTVSLVSSPPSLPRLTTKATKVTVAPSPVPPSTETQPPTRSLPRGTVTIPLRVSRP
TSSTRVEKTSLPTAKKAPPTSQSPATASRKESKQETKKRINQKPTIEPSEAPSTVKPMRR
MTDNTTSNVHLVTLKQTPQNPSNGPIPKKHVPSPTRKVDPSNVPLVYTKPPPGSARPVSR
ARAQAFNLTTPAATDGYQIFDPLGPTPFPFLLEYPGVKGERGPQGPPGLPGLPGPPGKRG
SRGPPGPHGNPGSPGPPGLKGQKGDPGLSPGKARNGQKGDVGLPGLTGFPGPPGRKGYKG
YPGPPGHPGDQGERGPDGSPGAKGYPGRQGLPGPIGDAGPKGSRGYIGLPGLFGLPGADG
ERGIPGVPGKRGKMGRPGFPGDFGERGPPGIDGNPGELGAPGPPGVLGLIGDMGSVGPIG
YPGPKGLKGLMGNPGEHGLKGDKGDQGGAGVPGDIGFQGDKGSQGLPGVPGARGKAGPLG
KVGDKGPVGFPGPPGPEGFPGDIGPPGENGPEGLKGKPGARGLPGPRGLLGQEGDEGPLG
PPGVPGPEGRSGRKGFPGRPGPDGPKGEPGNRGRPGKVGEQGLMGFIGPVGEPGIVGEKG
DRGSVGPPGPPGVKGSMGHPGTPGGVGFPGIPGPTGPAGVRGAPGIRGMKGRRGARGPDG
PVGEPGSRGVKGRPGEPGKLGPDGLQGKMGETGETGARGFPGIQGPSGPPGAKGAPGDPG
PQGPQGPPGPLGEIGHKGPPGSMGQPGLAGEPGMKGDPGQLGVPGEQGLVGQRGESGLEG
DSGPPGPDGVKGDKGEQGLEGEKGEKGNEGLKGKEGPPGYPGITGVRGPEGKPGKQGEKG
KPGQKGSKGYQGQLGETGSPGKEGPKGNQGPKGSRGTLGPMGAPGRMGAQGEPGLKGYQG
HAGPPGPIGPPGPKGEKGEQGDDGKVEGPQGPPGDRGPVGDRGDRGEPGDPGYPGQDGLD
GERGKPGQQGLPGDAGPPGQPGAKGSKGDVGQKGKQGARGNAGSRGSPGILGLPGPRGVV
GRQGQEGAPGADGVPGKDGVPGMLGEQGDDGEEGVTGMSGKRGNPGIPGLPGAQGPPGFK
GERGLPGQTGQTGKRGSSGGTGLPGTPGNPGPKGQPGDFGEAGFPGIAGMFGPKGPPGDL
GFKGIQGPRGPPGLMGKEGIIGPLGIQGPMGSLGPKGDKGSRGEMGLQGPRGPPGPRGHP
GPPGLPGIPASFQQDGFGAAFRTLIDSNTALKTEGYQHPDLFMLDHGGEIFKTLHYLSNL
IQSIKRPLGTKENPARICRDLMNCEQKMNDGIYWIDPNLGCSSDTIQVICNFTNGGQTCL
SPITVSKLDFDIGRVQMNFLRLLSSEVVQHITIHCLNTSVWREGSSEKPLEKAVRFKAWN
GQMFEADGQLRPEVAADDCKIKDGRWHRTLFSFRTQDPQQLPIVNIYNLPPSEPGKQYHL
EVGPVCFL
NT seq 5247 nt   +upstreamnt  +downstreamnt
atggagccggaatcagagccggtctccagactcagagctacagcagcaggcaggggggga
ttctgctttctctggactgtattgtgttttacctggttcctgggattcacacagggaaat
tctgaagatgtggacgttcttcaaagactgggcctgtcagggaaaaggccatcgagcgga
tggtcctcatcgcgtacagttcctcaaggggtcattcctttcaaatcaggggtcatcttc
actcagcgagcacgtgtcgaagcaccggtcagcaccatcctccccgcaggctccagcact
gacctgctcctagtgctgagcctctgctcccaccgcatcaacaatgcttttctctttgct
gtcaagagcaaaaagaaaaaactgcagctgggggtccagtttgtgcctgggaagatcata
gtgtatgtgggccacaagcgctctgtatattttgattacaatgtccatgatggccagtgg
cacaatatggccatcgatatccgtggccagacagtcactttatttacttcttgtgggaag
cgcagagtacatgcggatttgcattttaaaaaggacgaggcattggatccacatggatct
ttcctctttgggaagatgaaccagcactccgtgcagtttgaaggagccatctgccagttc
gatatttatccttccgccaaggcagctcatcattactgtaaatacctgaaaaaacagtgc
aggcaagcagatacctaccggccaaacctgccccccctcatccccctcctgcccagggat
cccagtgcctccccgagtaccccacaacatatggagccctcgctgcagggtctgaaaaac
ctgaccactgctgccccatccttggagtttggcagggtcactgcgcccctcaagactcgg
ggttcaggtgcaacaactgtctcattggtgtcatccccaccatcgctgccaagactgaca
accaaagccacaaaggtcacagtggccccatctcctgttccaccaagtactgaaacacag
ccacccacccgttcgctccctcgggggacggtgacaatccccctcagggtgtctcggccc
acttccagcacacgtgtggagaagacttcccttcccactgccaaaaaggccccgccgaca
agccagagccctgccacagccagcaggaaggagtccaagcaagagaccaaaaagaggatc
aaccaaaaaccgaccattgagccctccgaagcacccagtactgtaaagccaatgaggagg
atgactgataacacaaccagcaacgttcaccttgtcaccctaaagcaaaccccacagaac
ccgagcaatgggcccattccaaagaagcatgtgccgtcccccaccaggaaagtggatccc
agtaatgtccctctggtgtacaccaaaccgcccccggggtctgcccgtcccgtctccaga
gccagggcacaggccttcaacctcacaaccccagctgcgactgatggctatcagatcttt
gaccccctcggacccactccgtttccatttttactggaatatccaggcgtgaaaggagag
agaggacctcagggtccaccaggtctgccgggcttaccaggaccacctggcaagagaggt
tcccgaggtcccccaggtccccacggaaaccctggctcacctggccccccaggcctgaaa
ggtcagaagggtgatcctgggctgtcgcctggaaaagctcgcaacggacagaagggagac
gtgggcttacctggtttgactgggttccctggaccacctggtagaaagggatataaaggc
taccctggaccaccaggtcaccctggagaccagggcgaacgaggaccagacggcagtcca
ggtgccaaaggttatcctggcaggcagggtttacctggccccataggggacgctggtcca
aaaggcagtcggggatatattggtctcccaggattatttgggctaccaggggctgatgga
gaacgagggatccctggagttcctgggaagaggggcaagatgggtaggccgggttttcct
ggtgattttggggaacgaggacctccaggcattgatgggaacccaggagaattgggagcc
ccaggtcctcctggagtccttggactcattggtgacatgggctctgttggaccgataggc
tatccaggaccaaaaggcttaaaggggctgatgggaaaccctggagaacatggactgaaa
ggtgataagggtgatcagggaggagcaggtgttccaggagatatcggcttccaaggagac
aagggcagccagggtttgcctggggtccctggggcacgagggaaagcaggacccctggga
aaagtcggtgacaaaggtccagtcgggtttccaggaccacccggccctgagggcttccca
ggtgacattggcccaccaggagaaaatggtcctgaaggcctgaagggaaagccaggagca
cgaggcttacctgggccgagggggctgcttggacaagagggagatgaaggacccttagga
ccaccaggagtccctggtccagagggtcgatctggccggaagggatttccaggaagacct
ggtcctgatggtccaaagggtgagccaggaaaccgcggccggccggggaaagttggtgag
cagggtctaatgggttttattggtccagtgggggagcctggaatagtgggagaaaagggt
gaccgtggctcagtgggacccccaggccctccaggagtcaaggggtcgatggggcacccc
gggacaccaggaggagtgggttttcctgggatccctggaccaacaggtccggcaggagtc
cgtggtgcgccagggataagagggatgaaaggccgcaggggtgccagagggcctgatgga
ccagtaggcgagccggggtcacgaggtgtcaagggccgaccaggggagccaggcaagctg
gggccagatgggctgcaggggaagatgggtgagactggggagacaggagcacgcggcttc
ccaggtatccaaggaccttctggacctccaggagcaaaaggggctccaggcgacccgggt
ccacaaggaccacaggggccacctgggcctttgggagaaattgggcataagggaccgcct
ggctcaatgggacaacctggccttgcaggtgaacctggcatgaagggtgatcctggccag
ttgggagtccctggagagcaaggcctcgttggtcaaagaggagaatcggggctggaaggg
gacagcgggccacctgggccggatggtgtcaagggagacaaaggagagcaaggtctggaa
ggagagaaaggagaaaaaggcaacgaaggactgaagggaaaagaagggcctcctggatat
cccggcatcacaggtgtccgaggaccagaagggaaaccaggaaaacaaggggaaaagggc
aagcctggccagaagggcagcaagggctaccaggggcagctcggcgagacaggatctcca
gggaaggaggggccgaagggcaaccaaggccctaaaggatcccgaggtaccctaggacct
atgggtgctccaggaagaatgggtgctcaaggggaacctggcttaaagggttaccaggga
catgcaggaccaccagggccaattggaccaccagggccaaagggggaaaagggagaacaa
ggtgatgacgggaaggtagaaggcccacagggaccacctggagacagaggccccgttggt
gacagaggtgatcgaggggagcctggagaccctggttatcctggtcaagacgggcttgat
ggagaaagaggaaaacctggacagcaaggcttacctggggatgctggaccaccaggccag
ccaggagcaaagggatccaaaggtgatgtgggtcaaaaaggaaagcaaggagcacggggc
aatgcagggagcagaggctcaccgggcatccttgggctaccaggtcctcgaggagtggtg
ggacggcagggtcaagagggtgcccctggagcagacggagtgcctgggaaggatggcgta
cctgggatgctgggagagcagggtgatgatggggaagaaggtgtgacagggatgtcaggc
aaaagaggcaaccctggcataccgggactccctggggcacaaggaccaccaggattcaag
ggtgaaagaggattgcctggacagactggccaaacagggaagcgaggatcatcaggagga
acgggccttccagggacccctggcaatccaggacccaaaggacagccgggagactttggc
gaggcaggatttccagggattgcgggcatgtttgggccaaagggccccccaggagacctg
ggtttcaaaggcattcagggaccacgtgggccgcctggtctcatgggaaaagaaggaatt
attggtccgcttggcattcagggtcccatgggaagcctagggcccaagggagacaaaggc
agccgcggagaaatgggtcttcaaggtccaagaggtcctccaggcccacgaggacaccct
ggccctccgggactgccaggaattccagcctcatttcaacaagatggctttggggcagct
ttccggacactaatcgactcaaacaccgcgctcaagacagagggttaccaacatccagac
cttttcatgctggaccatggaggggagatctttaagactctacactacctcagcaacctc
attcagagcatcaaaagacccctgggaaccaaggaaaaccctgcacgcatctgtcgagac
ctcatgaactgtgaacagaagatgaatgacggtatctactggattgacccaaatcttggc
tgttcctcggacaccatacaggtcatctgtaacttcaccaatggtggtcagacgtgtctc
agccccatcaccgtctccaagctggattttgacatcggtagagtccagatgaacttcctc
cgcctcctgagctcagaggtggtgcagcacatcaccatccactgcctgaacacctccgtc
tggcgggaaggctcatccgagaaacctttggaaaaagccgtgcgcttcaaggcatggaac
gggcagatgtttgaggcagacggacagctcaggccagaagtggcagctgatgattgcaag
atcaaggatggacgctggcatcggactctcttttcgtttcggacgcaggaccctcagcag
ctgccaattgtcaacatctacaaccttcccccatccgagccaggaaagcagtatcacctc
gaggtcggccccgtgtgcttcctttga

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