Charadrius vociferus (killdeer): 104290953
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Entry
104290953 CDS
T08577
Symbol
PMS1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
cvf
Charadrius vociferus (killdeer)
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvf03400
]
104290953 (PMS1)
DNA repair and recombination proteins [BR:
cvf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
104290953 (PMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_mis_repair
HATPase_c_3
HMG_box
HMG_box_2
HATPase_c
HMG_WDHD1
HMG_box_5
CHDNT
Motif
Other DBs
NCBI-GeneID:
104290953
NCBI-ProteinID:
XP_009888436
LinkDB
All DBs
Position
Unknown
AA seq
933 aa
AA seq
DB search
MKQLPAETIRLLSSSQVITSVVSVVKELIENSLDASATNIDIKLENYGFNKIEVRDNGNG
IKVADVPVMAIKHYTSKISSSEDLERLTTYGFRGEALGSICCISEVLITTKTADDDFSTQ
YALDSKGHITSKKPSHLGQGTTVTVLKLFKNLPVRKQFYSTNRKCKEELKKIQDLLIAYG
IIKPDLRITLTHNKAVIWQKTRVSDHKMACMSVLGTAVMGSMVPFQHCCEDPEINLSGFL
PKAESDSSLTSLSSSERSFVFINNRPVCQKEILKLIRQYYSLVTHKDCTRLYPVFFLNIT
VPASAVDVNLTPDKTQVLLHYKESVLLAVENVLKSLYGPLPATVPGESNKTDVTSEDMFV
YRTEQTDVVVNEMGPSGNDDLHARTSFLSFSSDVQNCQAGKNTEICLNHQTFCGDNVRSC
LDKKEVSKSDAFPDSSLNLLCGEEQNGQNMTNIQSNSVPVDPKSKKADEHLLTSDNIDET
EKNEEVLVPKDLPEISADSWSMGSGFKNHLGDNLEPVKILIPEIGGTINKQNEHTGEQSN
DPQISNQSIKKRNVISDKFGRVTAYDLISSRIIRKPKSAIGFFTQDCRPKLITDNPKTSM
EDILLEIEEQWKNLNEEEKKNYEVKAAKDLERYNREVKKATGQTMHQPAKAAEKQKPKLK
TSPSDQQKLDKIFHAQTEKKRKPKQPTKIVTVPFSLSSCRHQLQRHEKNDPDEHKLFLIR
RQSFPDVWIFATEKKLMLLNPYRLEEALLHKRLLMNHKLPVEKLDKPIVLMDSLLGGSQY
MAALYKMQKDYQSFNGSGYLSDPRLVANGFQIKVIEGASAIESHLEIEGMANCLPYYGIS
DLKEILNAVIHGNAKEVYECRPLKVINYLEGEAVRLARQLPLHLSKEDVQNTIYRMKQQL
GKENKGCVHGRPFFHHLTDIPEVDKHSSMEITQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagcttccggcagaaactattcgtctcctttcaagttctcaggtgattacatca
gttgtcagcgtggtgaaggagctgatagaaaattccttggatgccagtgccacaaatatt
gatattaaactggagaattatggatttaacaaaatagaagtaagagacaatggcaatggg
atcaaggttgctgatgttccagttatggcaattaaacactacacctcaaaaataagctct
tctgaggaccttgaaaggttgacaacatacggtttccgtggggaggctttgggatcaatt
tgctgcatatcagaggttttgatcacaacaaagacagctgatgatgatttcagcactcag
tatgctttggatagcaaagggcatataacttctaaaaagccttcccatcttgggcaaggt
actacagtaacagtcctgaagttgtttaagaatcttcctgtaagaaagcagttttactca
acaaatagaaaatgtaaggaagaactgaaaaaaatccaagatctactgatagcatacggt
atcataaaaccagacctgaggataaccttaacacataataaggcagttatttggcaaaag
accagggtgtcggatcacaaaatggcctgtatgtcagttctgggaacagccgttatgggc
agtatggtaccttttcaacactgctgtgaagatcctgagataaatctttctggatttctc
ccaaaagctgaatcagacagttctttgacaagcctttcaagttcagaaaggagtttcgtt
tttataaataatcgtccagtttgtcagaaggaaatattgaagttaattcggcagtactac
agtctggtgacgcacaaggactgtactcgtttatatcctgttttctttttgaatattacc
gtacctgcctctgctgtggatgtgaatttaacacctgataaaactcaagttttactgcat
tataaggaatctgtcttacttgctgttgaaaatgtgttgaaatcactgtatgggccacta
cctgctacagtccctggtgaaagtaataaaacagatgttacctcagaagacatgtttgtt
tatagaacagaacaaacagatgtggttgttaatgaaatgggaccatctggaaacgatgat
ctacatgctcgtacttcattcctttcattcagcagtgatgtgcaaaactgtcaagcagga
aaaaacacagagatctgcttaaatcatcagacattttgcggtgataatgtgcgtagttgc
ctagacaaaaaagaggtttctaagagtgatgcctttccagacagttccttaaatttattg
tgcggggaagaacagaatggtcagaatatgaccaatattcaaagtaacagtgttcctgtg
gaccccaagtctaaaaaagctgatgaacatcttttgacttctgataatattgatgaaaca
gaaaaaaatgaggaagtcttagtccctaaagacttacctgaaatctctgctgatagttgg
agtatgggaagtggatttaaaaaccatctaggagacaacctggaacctgttaagattttg
attcctgaaattggaggaacaattaataagcaaaatgaacacactggtgaacaaagcaat
gatccacaaatctcaaatcaaagcataaagaaaagaaatgtgataagtgataaatttgga
cgtgtgacagcttatgacttaattagtagtagaataataaggaaaccaaagtctgcaatt
ggattttttactcaagattgtcgtccaaaactgataactgataatccaaagaccagcatg
gaggacatcctgctggaaattgaagagcagtggaagaatctgaatgaagaggaaaaaaag
aattatgaagttaaagctgctaaagacctggagcggtacaacagagaagtcaagaaagct
acgggacagacaatgcaccaaccagcaaaggcggcagaaaaacagaaacccaagctgaag
acttccccatccgaccagcagaagcttgacaagatatttcatgctcaaactgaaaagaag
cggaaacctaagcagcctacgaaaattgtgacagtgcctttttctctgagttcctgtaga
catcagcttcagagacatgagaagaatgatccagatgaacacaagcttttcctgatccgt
cgtcagagttttcctgatgtctggatatttgctactgaaaaaaagctaatgttgctgaat
ccatatagattggaagaagccctgctacataaaagattactgatgaatcataagcttcca
gtagagaaactggacaagccaattgtgttaatggacagtcttcttggtggatctcagtat
atggctgctctttataaaatgcagaaggattaccagagtttcaatggatcaggttatttg
tcagatccaaggcttgtagcaaacggtttccagataaaagtgatagaaggtgcttcagca
atagaaagtcatctggaaattgaagggatggcaaattgtctgccatattatggtatttct
gatttgaaagaaattctgaatgctgtaattcatggaaatgcaaaggaggtgtatgaatgt
aggcctctcaaagtgataaattacttggagggagaagcagtacgtttagctcggcagctg
cccttacatttgtcaaaagaagatgtacaaaacacaatttacaggatgaagcaacagctt
ggaaaggaaaataaaggctgtgttcatggtcgtcctttttttcatcatttaacagatatt
ccagaagttgacaagcacagctccatggaaattactcagtaa
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