Charadrius vociferus (killdeer): 104291398
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Entry
104291398 CDS
T08577
Symbol
IFT88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
cvf
Charadrius vociferus (killdeer)
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cvf03037
]
104291398 (IFT88)
Cilium and associated proteins [BR:
cvf03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
104291398 (IFT88)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_7
TPR_19
TPR_8
TPR_14
TPR_6
TPR_16
ANAPC3
TPR_11
ARM_TT21_4th
TPR_9
TPR_10
TPR_17
TPR-S
TPR_15
ARM_TT21_5th
TPR_CcmH_CycH
HEAT_Nup120
ARM_TT21_C
TPR_21
DUF6584
DUF2989
HAT_PRP39_C
Coatomer_E
FumaraseC_C
ARM_TT21_2nd
GnHR_trans
Motif
Other DBs
NCBI-GeneID:
104291398
NCBI-ProteinID:
XP_009888930
LinkDB
All DBs
Position
Unknown
AA seq
828 aa
AA seq
DB search
MFHRKMMQNVHLAPEADEDDLYSGYNDYNPTFDTEDLENDVAFQQAARTSHGRRPPVTAK
IPGTSASRPLATGFGSKATLTSSMGRPMTGAIQDGVARPMTAVHAAGYTKAAMRGSSFDP
LGQARGPAPPLEMKNSDSSEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKEAGRKE
RVLVRQREQIATPENINLDLTYSVLFNLASQYAANEMYAEALNTYQVIVKNKMFSNGGRL
KVNMGNIYLKQRNYSKAIKFYRMALDQVPSVHKEMRIKIMQNIGIAFIKTGQYVDAISSF
EHIMSMSPNLKAGFNLIVCYFAIGNSEQMKKAFQKLIAVPLEVDYDDKYISPNDDPHTNL
LIEAIKNDSLRQIERERKSMAEDYIMTAAKLIAPVIETSFAVGYDWCVEVVKASHYVELA
NDLEINKATTYLRQQDFNQALETLKMFEKKDSRVKSAAATNLSFLYYLENELAQATNYAD
LAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNLGLSYKKLNRI
DEALDCFLKLHAILRNSAQVLHQIASIYEIMEDPNQAIEWLLQLISVVPTDPHVLSKLGK
LYDNEGDKSQAFHYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIEYFERAALILPTQV
KWQLMVASCYRRSGNYQKALEKYKVIHRKFPENVECLRFLVRLCTDMGLKEVQEYVTKLK
KVEKLKEIREQRIKSGRDGSARSRREGNAAGGKGQRNSGGTKGERLSAKLKGLPGTSEPY
ESSGNKEIDASYIDPLGPQAERPKTAARKRTEEDDFADEELGEDLLPE
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgtttcacagaaaaatgatgcaaaatgtgcatctggctcctgaggctgatgaagatgat
ctttattctggctacaatgattataatcccacgtttgacacagaggatttagaaaatgat
gtagcttttcaacaggcggcaagaacaagtcacggtagaagaccccctgtgacagccaaa
attcctggtacatcagcttcaagacctttagctactggatttgggtcaaaggcaacttta
acttcgtctatgggaagaccaatgacaggagctatacaggatggggttgctcgaccaatg
acagcagtgcatgctgcaggttacactaaggcagctatgagaggttcttcatttgatcct
cttggccaagcaagaggtcctgctccacctctggaaatgaaaaattcagacagttcagaa
gagaagattagacagttggaaaaaaaagtaaatgaactggttgaagaaagctgcattgcc
aacagctgtggagacttgaaattggctctggagaaagcaaaagaggctgggagaaaggaa
agagtattggtgagacaacgtgaacaaattgctactccagaaaacatcaacttggacctc
acttactcagttcttttcaatctggccagtcagtatgctgctaatgaaatgtatgctgaa
gcactgaatacctatcaagttatagtgaagaataagatgttcagcaatggaggtagactg
aaggtgaatatgggaaatatatatttaaaacaacgaaactattccaaagctatcaaattc
taccgtatggctctagaccaggttcctagtgtccacaaagagatgaggattaaaataatg
caaaatatcggaattgcatttattaaaactggccagtatgttgatgccatttcttcattt
gaacatataatgagcatgtccccaaacctgaaggcaggcttcaacttgattgtgtgttat
tttgctattggaaacagtgagcaaatgaaaaaagccttccaaaaactgattgcagttccc
ttggaagtggattatgatgacaaatacatttcaccaaatgatgatccacatacaaatcta
ctgattgaagccattaaaaatgacagcttaagacagatagagcgtgagaggaaatccatg
gcagaggactacatcatgacagctgctaaactcattgcaccagtaattgagacatctttt
gcagtgggctatgactggtgtgttgaagtagtaaaagcttcccactatgtggagttagcc
aatgacctggagataaataaagcaactacttacttgaggcagcaggattttaaccaggca
ctggagactttgaaaatgtttgaaaaaaaggatagcagagtaaagagtgcagctgcaacg
aacctttcattcctttattatttggagaatgaattggcacaagcaactaactatgcagat
ttagctgtaaattctgataggtacaacccagcagctctaactaacaaaggaaatactgtt
tttgcaaacggagactatgaaaaagcagctgagttttataaggaagctctcaggaatgat
tcctcatgcactgaagcactttataatcttggtttatcatacaagaaattaaacagaata
gatgaagctttggattgttttctgaaactccatgcaatccttcgaaatagtgcccaagtc
cttcaccagatagcaagcatatatgagataatggaagatcccaatcaagccatagagtgg
ctcctgcagttgatcagcgtagtaccaactgatccacatgtactttcaaagctagggaaa
ttatatgataatgaaggtgataaatcccaagcttttcattattactatgagtcgtaccgg
tatttcccttcaaacattgaggtcattgaatggcttggagcctactacattgacacccag
ttttgtgaaaaagccattgagtactttgaaagagcagcacttatcctaccgacacaagtg
aagtggcagctgatggttgcgagttgctacaggagaagtggtaactaccagaaagcctta
gagaaatacaaagtcattcacagaaagttcccagagaatgtggaatgcctccgattttta
gttcgtctctgcacagatatggggctgaaagaagtccaggaatatgtgacaaagcttaag
aaagtggaaaaattaaaagaaataagagagcagcgcattaaatctggcagagatggcagt
gcacgtagccgcagagaaggaaatgctgctggtggtaaaggacagagaaatagtggtggt
accaaaggggaaagactgagtgccaaactaaaaggtttgcctggaacaagtgaaccctat
gaaagtagcggcaataaagaaatagatgcctcctacatagatccacttggcccacaagca
gaaagaccaaaaactgcagcaagaaaaagaactgaggaagatgactttgctgatgaagaa
ctaggagaggatttgcttccagaatag
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