Charadrius vociferus (killdeer): 104292242
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Entry
104292242 CDS
T08577
Symbol
SMG5
Name
(RefSeq) protein SMG5
KO
K11125
protein SMG5
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104292242 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvf03019
]
104292242 (SMG5)
03032 DNA replication proteins [BR:
cvf03032
]
104292242 (SMG5)
Messenger RNA biogenesis [BR:
cvf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
104292242 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
104292242 (SMG5)
DNA replication proteins [BR:
cvf03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
104292242 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
104292242
NCBI-ProteinID:
XP_009889890
LinkDB
All DBs
Position
Unknown
AA seq
1044 aa
AA seq
DB search
MRVAGSIICYSETLLSVLPCRAVVEAVHRLDLILGNKAAYQEVFKPENISLRNKLRELCV
KLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIGFYQH
LLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASEKEMEWAQMACHRCLVYLGDLARY
QNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEATYCYLRCIQSEVS
FEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPSKKRGKDIKRLLVSFMYLQSLLQPKSSS
LDSELTSLCQSVLEDFNLCLFYLPSPPNLSSTSEDEEEYESGYSFLPDLLIFRMVIICLM
SVHSLKRAGSKQYSAAIAFTLALFSHLINHVNIRLQAELEEGENPVPAFQSDGTDDQEPR
EPLNSIEKEVEADLANHQPSEEQRKNDCKKSKKYSRLSCLRRRRHPQKVDESDLSEGFDS
DSSQGSIKGSDGSESGSEKSDEEAEAAFDVETDSDMNSQESRSDLEDMEDEPGEEGSGRG
KSGPKEALKNCVDGSGLGDSKSPNISKIEAPDPAVNGPASLSTNDASIASNLQAMSTQLF
QTKRCFRLAPTFSNILLKPNSEPPILKDGIESKPCVNGDLEKPGLAEQDDVSDSEESISS
NKSCRNERSLQEKLEIVTNEGLLLTVKVFLDWLRTNTDLIIMCAQSSQSLWNRLSVLLNL
LPSAADLQESGLALCNEVKDILSGAELPDLKANLLLPEDVALRNLPPLKNAHKRFNFEQD
RPIFSAVEESVVRICCIRSFGHFITHLQGSILQFNSELGIFISIAQSEQDNLLHQAQAQF
HMAAEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQALCQHLAVVK
QLATSGRFIIIIPRTVIDGLDFLKKENAGARDSIRYLEAEFKKGNRYIRCQKDVGKSFER
HKLKRQDLDAWNLYKILDSCKQLTVSQGSGEDDTTGMVTIITGFQLEDPSTFSAPMQSAI
QAAANASVEIKNVLEFYKQWKEMG
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgagagtggccggctcaataatctgttattctgaaactcttctttctgtgttaccttgc
agagcagtggtagaggccgttcaccgtttggatctcatccttggtaataaggcagcgtat
caagaagtgttcaagccggagaacatcagcttgagaaacaagctgcgggagctgtgtgtg
aagctgatgttcttgcatccagtggattatggaagaaaagcagaagaactgctctggaga
aaagtttactatgaagttatccagctcattaaaacaaataaaaagcacattcacagccgc
agcactctggagtgcgcgtaccggactcacttagttgctggcataggattttaccagcac
cttctcctctacatccagtctcactatcagctggagctgcagtgctgtatcgactggacg
cacgtcacagaccctctaataggctgcaagaaacctgtgtctgcatcggagaaggagatg
gagtgggcacagatggcatgtcacagatgtctggtttatctgggagatctagctcgctat
cagaatgaactggcaggtgtggacacagagttgctggctgagcggttttactatcaagcc
ctttctgttgcaccacagattggcatgccctttaaccagctggggacactggcaggcagc
aaatactacaacgtggaagcgacatattgctacttacgctgtatccagtctgaagtgtcc
tttgaaggtgcctatgggaacctgaagcggctgtatgacaaagcagccaaaatgtatcac
cagttgaagaaatgtgaaaccagaaagttgtctccaagcaagaaaagaggcaaagacatt
aagaggttgctggtgagctttatgtacctgcagagtcttttgcagccaaagagcagttcc
ctggattctgagctgacatctctctgccagtctgtgctggaggatttcaacctgtgcttg
ttctacctgccctctcctcctaatctgagctcaactagtgaagatgaagaggagtatgag
agtggctactccttccttcctgatctcctgatctttcgcatggtgatcatctgccttatg
agtgttcacagcctcaagagggcaggttcaaagcagtacagcgcagccatcgctttcacg
ctggccctcttctctcacctgataaatcacgtcaatattcgcctccaggcagagctagaa
gaaggggaaaatccagtcccagcctttcagagtgatggcacagatgaccaggagccgcgg
gagccattgaactcgattgagaaggaagttgaagctgacttggccaatcatcagcccagt
gaggaacaacggaagaatgactgcaagaaaagcaagaaatactcccgcctctcctgtttg
cgtcgccgccgccacccccagaaggtggatgagagcgacctgagtgagggctttgactct
gactccagccagggctccataaagggcagtgatggctcagaaagtggctcagagaagagt
gacgaggaagcagaagctgcttttgatgtggagacggactctgacatgaacagccaagaa
tctcggtctgacttggaggacatggaggatgagccgggtgaggagggaagcggccgaggc
aaaagtgggcccaaagaggccttaaaaaactgtgtggatggcagtgggcttggggactcc
aagagcccaaacatctctaaaattgaggctccagatccagcggtcaatgggccagcttcc
ctgagcactaatgacgcaagcatagccagtaacctccaggccatgtccactcagctgttt
caaaccaaacgctgctttcgcttggctcccactttcagcaacatccttctgaaaccaaac
agtgaaccacccatcttgaaggatggaatagaaagcaagccttgtgtcaatggagatctg
gagaagcccggcttggcagagcaagatgatgtgtctgactctgaggaaagcatttcaagt
aacaaatcctgcaggaatgagcgatcccttcaggagaagctagagatcgtgaccaacgaa
gggctgcttctcactgtcaaggtgttcctggactggctgaggacaaacacggacctcatc
atcatgtgtgctcagagctcccagagcctgtggaacaggctgtctgtgctcctgaacctt
ctgccttctgctgcagacctgcaggaatcagggctggccctgtgtaatgaagtcaaggac
attctgagtggtgctgagctcccagacctgaaagccaacttgctgctcccagaagatgtg
gccctgcgaaatcttccccctctgaaaaatgcacacaagaggtttaactttgagcaggac
cggcccattttctcagcagttgaggagtctgttgttcggatttgctgcattcggagcttt
ggccacttcattactcacttgcaaggcagcatcctgcagttcaactcagagcttgggatc
ttcatcagcatagcacagtcggagcaagacaacttgctgcaccaagcccaagcccagttt
cacatggctgcagaggaggctcgtcggaacaggctaatgagagatatggctcagcttcga
ctgcagctggaggtttctcagctggagggaagtctccagcagcccaaagcgcagtcagcc
atgtctccttatcttgtcccggacacccaggccctctgccagcacctggctgttgtcaag
cagctggccaccagcgggaggttcataatcatcatccctcgaacagtgattgatggctta
gacttcctgaaaaaggagaacgcaggtgctcgggacagcatccggtatctggaggcagaa
tttaaaaagggaaacaggtacattcgttgccagaaagatgttgggaagagctttgagagg
cataaattgaagagacaagatttagatgcctggaatctctataaaatactggacagctgc
aaacaactgacagtgtcccaaggaagcggagaggacgacaccacaggaatggtcaccatc
atcacgggctttcagctggaggacccaagcacgttctcagcgcccatgcagtctgccatc
caggcagccgccaatgccagcgtagaaataaaaaatgttctggagttctacaagcagtgg
aaagagatgggctga
DBGET
integrated database retrieval system
