Charadrius vociferus (killdeer): 104293059
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Entry
104293059 CDS
T08577
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03013
Nucleocytoplasmic transport
cvf03015
mRNA surveillance pathway
cvf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104293059
09122 Translation
03013 Nucleocytoplasmic transport
104293059
03015 mRNA surveillance pathway
104293059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvf03019
]
104293059
03041 Spliceosome [BR:
cvf03041
]
104293059
03009 Ribosome biogenesis [BR:
cvf03009
]
104293059
03012 Translation factors [BR:
cvf03012
]
104293059
Enzymes [BR:
cvf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104293059
Messenger RNA biogenesis [BR:
cvf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104293059
mRNA cycle factors
Stress granule specific factors
104293059
Spliceosome [BR:
cvf03041
]
Complex C
Other components
EJC/TREX
104293059
Ribosome biogenesis [BR:
cvf03009
]
Eukaryotic type
90S particles
Helicases
104293059
Translation factors [BR:
cvf03012
]
Eukaryotic type
Initiation factors
eIF-4
104293059
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
TniB
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
104293059
NCBI-ProteinID:
XP_009890822
LinkDB
All DBs
Position
Unknown
AA seq
405 aa
AA seq
DB search
MTSSGLANLAPLPMLEKRCGAKQLGRKDGLLPCALSSDDEEKSNGAAASAGFEKPSAIQQ
RAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGL
LALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL
DEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDEL
TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSS
MHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIG
RSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgacaagttcaggcttggcaaatctagcgccgttgccaatgctggagaagagatgtggg
gccaagcagcttggccggaaggatggactgcttccctgcgcgctctcctctgatgatgag
gaaaaaagcaatggagcggcggcctccgcaggttttgagaagccgtcggccatccagcag
agagccatcaagcagatcatcaaggggagagacgtcatcgcccagtcacagtcaggaaca
gggaagacagcaacattttccatctctgttctgcagtgcctggatatacaggttcgagag
acccaggcattgatcttggcaccaactcgggagctggctgtacagatccagaagggtctt
cttgctctgggagactacatgaatgtccagtgtcatgcctgcatcggagggaccaacgtg
ggcgaagatatcagaaaactggactatgggcagcatgttgttgctggcactccaggccgt
gtgtttgatatgattcgtcgtcgaagtttaaggactcgtgccatcaaaatgctggttttg
gatgaagcagatgaaatgctcaataaaggttttaaggaacagatttatgatgtctacagg
tacttgcctccagctacacaggtggttctgatcagcgccactctgcctcatgaaattctg
gagatgaccaacaaattcatgacagaccccattcgcatcttggtgaaacgcgatgagttg
acccttgaaggaatcaagcagtttttcgtggctgtggagagggaagaatggaagtttgac
accttgtgcgatctctacgacacgctcaccatcacccaggctgtcatcttctgcaacacc
aagagaaaggtagactggctcaccgagaagatgagagaagccaacttcacggtttcatcc
atgcacggggacatgccacagaaggagagggagtccattatgaaggagtttcgatccggc
gcaagccgagtccttatttcgacagatgtttgggctagaggcctggacgtgccacaggtg
tccctgatcattaactatgacttacccaacaacagagagctctacatacacagaatcggc
cggtcgggcagatacggccgaaaaggtgtagcaatcaactttgtgaagaatgacgacatc
cgcatcctgcgagacatcgagcagtactactccacccagatagatgagatgcccatgaac
gtcgctgatctcatctga
DBGET
integrated database retrieval system
