KEGG   Charadrius vociferus (killdeer): 104293167
Entry
104293167         CDS       T08577                                 
Symbol
GEMIN5
Name
(RefSeq) LOW QUALITY PROTEIN: gem-associated protein 5
  KO
K13133  gem associated protein 5
Organism
cvf  Charadrius vociferus (killdeer)
Brite
KEGG Orthology (KO) [BR:cvf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cvf03019]
    104293167 (GEMIN5)
   03041 Spliceosome [BR:cvf03041]
    104293167 (GEMIN5)
Messenger RNA biogenesis [BR:cvf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     104293167 (GEMIN5)
   mRNA cycle factors
    P-body specific factors
     104293167 (GEMIN5)
Spliceosome [BR:cvf03041]
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   SMN complex factors
    104293167 (GEMIN5)
SSDB
Motif
Pfam: GEMI5_RBS TPR_GEMI5 WD40_CDC20-Fz Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st Beta-prop_WDR5 Beta-prop_RIG_2nd WD40_Prp19 Beta-prop_EML_2 WD40 WD40_WDHD1_1st ANAPC4_WD40 DSE1_N Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd EIF3I WDR55 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd Beta-prop_IFT140_1st Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd Beta-prop_HPS5 Beta-prop_RIG_1st WD40_Gbeta WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_WDR41 PAC11 WD40_RFWD3 Beta-prop_Nup120_160 WD40_MABP1-WDR62_1st WD_LRWD1 TPR_IF140-IFT172 Tricorn_2nd
Other DBs
NCBI-GeneID: 104293167
NCBI-ProteinID: XP_009890947
LinkDB
Position
Unknown
AA seq 1503 aa
MHDRGKRLPVASHLQDKTTVFAVERELIGHTDRISGFAFCHSPGQSSLCASSSDDGSVQI
WDVEALAPVAEYSLHQNAISALHWSPLVKDLIVSGDEKGVIICYWHNRSDSQQFFPEPRT
IFCLTCSPHHENLVAIGYKDGMVVIIDXRLRGHDDEIHCLAWCPVPGEERLPAWQDDLQV
PSEEGKVPNGELTQDTTTKKGCYLASGSKDQTIRIWSCTRGRSVMTLKLPPTKRRGGAID
PAVKERIWLTVHWPSGRSTEIVSSSFGGELLLWDLTQSGKRKWTLLGSSEGQNHSRIVFN
LSSVKRQDKEFLFSISMDRDVKCWDLSALDCSWTMPSLGGFVYSLAFSPVDTGCLAIGVG
DSMIRVWNTLSMNNIYDVKTFWQSIKSKVTALSWHPTKEGCLAFGTDDGKVGIFDTFSSS
AKNKPPQISSTYHKKTVYTLAWGPPTPPLSSGESSSTLXQSEQPPVTLYSCAGEGIVFQH
NPWKLNGEANDINKVIRDTNSIKHKLPARTEISWKPDGKLLALGNEDGSIEIFQAPNLKL
LCTIQQHHKLINAIRWHHEHGSEPDLSYLIASGSINATIYVHNLKSVVESTSESPLTITE
PFRTLAGHTAKITSLSWSPHHEGRLVSACYDGTAQVWDVMKEEPLCNYRGHQGRLLSVQW
SPVDSDSVYTGADDFSVHKWHISKQEHTRPPQGKKSIELEKKRSMQPKVKTKKKKKPIGK
SPAKQDLSDAVNGDESMKEMLLEENGVSDHEGEKEAQEAELPDKGCMTVSKDTSSSAYDY
SSCSLPKPFVTQKATPVKKDLPKEKPTPDASLKKRKPRSILPFSTFMDHRSKDELHQDCL
RLATCLKTKDSNEDVSPDLKDRIHLGLFTDRASLHKMIDVEGKHHLENGHPELFQQLMLW
KGDMKGVLQAAAERGELTDQLVAMSPMVGYQAWVWTVEAFAKQLCFQEQYVKAASHLLSI
HKVYEAVDLLKVNHFYREAIVIAKARLRPEDPILRDLYTSWAALLEKDGHYSMAAKCYLG
ASSPYDAVKVLAKKGDVTSLKTAAELALISGEEELSASLSFRCAQDLLLSRNWVGAQEVL
QQHKTLFGQRLVFCLNELLCKCLSERNPCDRKSPVPPCYHSWELNREASFFDMVIEVWQN
ILGMGTTEQATCAWQQLRSIEHPPSTSNAHPKQVLFHISHDLTLAALSYQTATWDEAVKS
ILGAVTRSYDAGNFTLMQEICSIILPEGCDKLRHKLDSTNSQSMDACRSLESFVAYGLLY
DLWWNPPKDSLGLQKAVLDPVLRPSEQTALEKSYVSGQSSSEETPDQTVVEMDENLCNTN
EVHRCETESDSRTSSVNLVDSQTKLNGCKVLLSEEIAALQNTQRDIAEVQQILADMIRQH
QQQRNNLQENTNGNTQESNLQQSSETEPDKQCSDSNQMNCKDEVKEPVTLPELTKQLLKA
KQKLAEFPDNLKVFPFPDVLECCLVLLHAGSQCPPELQEQALDLLRKHGSASIYKKAGRR
FLT
NT seq 4512 nt   +upstreamnt  +downstreamnt
atgcatgacagaggaaaaaggctaccagttgctagccacctgcaagacaagaccacagtc
tttgctgttgaacgagagctcatcgggcacacggacaggatctccgggttcgcgttttgc
cacagccccgggcagagcagcctctgcgccagcagctccgacgatggaagcgtccaaatt
tgggacgtggaggccctggctccggtggcggagtacagcctgcaccagaatgcgatctca
gcattgcactggtcacctcttgtgaaagatctgattgtatccggtgatgaaaaaggtgta
attatttgttactggcacaacagaagtgacagccagcagttcttcccagagcctcggaca
attttttgtctcacttgttctcctcatcatgaaaacctggtagcaattggctacaaggat
ggcatggtggttataattgatnnacggctaagaggccatgacgatgaaatacattgtctg
gcctggtgccctgtgcctggtgaagaacggttacctgcttggcaagatgacctccaagtt
ccttcagaggaaggcaaagttccaaatggggagctgacacaggacacaaccacgaagaaa
ggctgttacctggcttcgggaagcaaagatcagaccatacgaatatggagctgtactaga
ggcagaagtgtgatgactttgaagttgccacccacaaagagaagaggtggagccattgat
cccgctgttaaagagcgcatttggctgactgttcactggccttctggtcgttccacagaa
attgtatccagctcctttggaggagaattgctgctctgggatttgacccagtctggaaaa
cgcaagtggactcttctgggatcttcagaaggacaaaatcactcccggattgtgttcaat
ctgagttctgtgaagcgtcaagacaaagagttccttttttccatttcaatggacagagat
gtgaagtgctgggacctatcagctctcgattgtagctggaccatgccctcgcttgggggg
ttcgtttatagtcttgccttctcccctgtggacacaggctgtcttgccattggtgtcgga
gacagcatgatccgggtgtggaatactttgtccatgaacaatatttatgatgttaaaacc
ttctggcaaagcataaagtccaaagttactgcattatcctggcatccaactaaggaaggc
tgcttggcttttggaacagatgatggaaaagttggcatatttgacaccttctccagcagt
gctaagaataagccgcctcaaatctccagcacttaccacaagaagactgtatacacatta
gcctggggacctccaactcctcctctgtcttctggtgagtcttccagcaccttgtgacaa
agtgaacagccccctgtaactttatatagttgtgctggagaaggtattgtttttcaacac
aacccctggaagcttaatggagaggcaaatgacatcaacaaagtcatccgagacactaat
tcaatcaaacacaaactgcctgcacgtacagagatcagctggaaaccagatggcaaactt
ttggctcttggcaatgaagatgggtcaatcgaaatatttcaggcaccaaacttgaagttg
ctctgtactatacagcaacatcataaactgattaatgccattcggtggcatcatgagcat
gggagtgagccagacctgagttacttgatagcttcaggctcaatcaacgccactatttat
gtgcataatctgaagagcgttgtagagagcacttcagaaagccctttgacaataacagag
ccttttcgaactctggctgggcacacagctaaaatcacaagtctgtcttggagcccgcac
catgagggaagactggtatctgcttgctatgatggcactgcacaggtatgggatgttatg
aaggaggagccactctgcaactaccgagggcaccagggccggctactgagtgtccagtgg
tcaccagtggattcagattctgtttatactggagcagacgatttttctgttcacaaatgg
cacatttcaaagcaggagcatacacggcctccccagggcaaaaagagtatagaattagag
aaaaaaagaagtatgcaaccaaaagtcaaaaccaagaagaaaaaaaagcctataggaaag
agtccagccaagcaggatctaagtgatgctgtgaacggagatgagagcatgaaggaaatg
ttgctagaggaaaatggagtgtcggaccacgaaggagaaaaagaagctcaggaggcagag
ttgcctgataaaggctgcatgactgtgtccaaggatacatcttcatctgcatatgattat
tcttcatgcagcttgccaaagccttttgtgacccagaaagccactcctgtgaaaaaggat
ctacctaaagagaaaccaactcctgatgcctccctgaagaagaggaagcctcgttctatt
ctacccttcagcacattcatggatcacagatcaaaagatgaattgcatcaggactgcttg
aggctggctacgtgtctgaaaaccaaagatagtaatgaagatgtgtccccagacctcaag
gatcgcatccacctggggctgttcacagacagggcttctctgcacaagatgattgatgtg
gaaggaaaacatcacttggagaatgggcatccagagctctttcagcagctcatgttgtgg
aaaggagatatgaagggtgtcctccaggcagccgctgagaggggagagctaacagaccag
ctggtagcaatgtcgcccatggttggatatcaggcctgggtttggacagtagaagctttt
gcgaagcagctgtgttttcaggagcaatatgtgaaggctgcctcccatctcctctccatc
cacaaagtttatgaggctgtcgacctcctgaaagtcaaccatttttacagggaagcaatt
gtaattgctaaggccaggttgcgtccagaagatccaattctgagggatctttacaccagt
tgggcagctctgttagagaaagatggtcattattccatggccgccaaatgttatttgggg
gcttcctcaccctatgatgcagttaaagtgttggcaaaaaagggggatgtgacatccctt
aaaactgctgcggagcttgcactgatatctggagaggaggagttgtcagcaagtttgtct
ttcagatgtgcccaagacctgctgttatccagaaactgggtgggagctcaggaagtcctc
cagcaacataaaactttatttggacaaagacttgttttctgccttaatgaactgctttgc
aagtgccttagtgaaagaaatccctgtgaccgaaagagccccgtgcctccctgttatcac
agctgggagctgaacagagaggcctcattttttgacatggtgatagaagtgtggcagaat
atattgggcatgggcaccactgaacaagccacgtgtgcatggcagcagctgcgcagtatt
gagcatcctccttctaccagcaatgcacacccaaagcaggtgcttttccatatctcccat
gacctgacccttgcagccctgagctatcagactgctacctgggatgaggcagtgaaaagt
attcttggagctgtgacccgcagttatgatgctggtaatttcactctgatgcaagagatt
tgcagtatcatccttcctgaaggttgtgataagctgagacacaaactggacagcacaaat
tctcagagcatggacgcttgcagaagtttagagagctttgtggcttacggactgctgtat
gacctgtggtggaacccacccaaagactccctcggcttgcaaaaggctgtcttggatcct
gtgctgcgtcccagtgagcagacagctcttgagaagagttacgtttcaggtcaatcctcc
tctgaagaaactcctgatcaaactgtagttgagatggatgaaaacctctgcaatacaaat
gaagttcataggtgtgagacagaaagcgattcaagaactagctcagtcaatttggtagac
agtcagacaaaactgaatggctgcaaagtgcttctttcagaagagattgctgctttacaa
aacacccagagagatatagctgaggtccagcagattttagcagatatgatccgccagcat
cagcagcagaggaacaatctccaggaaaacacaaatggaaacacccaggaaagtaacctg
cagcagagttcggagactgaaccagacaaacaatgctctgacagcaaccagatgaattgt
aaagatgaagtaaaggaaccagttacactccctgagctaacaaagcagcttctaaaagca
aagcagaaactagcagaatttccagataatttaaaggtcttcccgttccctgatgtgctg
gagtgctgtcttgtacttcttcacgctggatcccagtgccctcccgaactacaggaacag
gcattggatctccttaggaaacacggtagcgctagtatttacaaaaaggctggcaggagg
ttcttgacatga

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