Charadrius vociferus (killdeer): 104293197
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Entry
104293197 CDS
T08577
Symbol
CTR9
Name
(RefSeq) LOW QUALITY PROTEIN: RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
cvf
Charadrius vociferus (killdeer)
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvf03021
]
104293197 (CTR9)
Transcription machinery [BR:
cvf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
104293197 (CTR9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_19
TPR_1
TPR_2
TPR_14
TPR_8
TPR_16
TPR_12
TPR_CcmH_CycH
TPR_17
TPR_10
TPR_6
TPR_7
TPR_11
ARM_TT21_5th
TPR_Slam
ANAPC3
TPR_EMC2
ARM_TT21_4th
Motif
Other DBs
NCBI-GeneID:
104293197
NCBI-ProteinID:
XP_009890990
LinkDB
All DBs
Position
Unknown
AA seq
1156 aa
AA seq
DB search
MFSVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEDFVKLLEAARIDGN
LDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMADKIIMYDQNHLL
GRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGALAYYKKALRT
NPGCPAEVRLGMGHCFVKLNKFXKARLXXXXXXXXLNSKCVGALVGLAVLELNNKEADSI
KNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYGKVQHLALHAFHNTEVEAMQAESCYQ
LARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENASQCFEKVLKAY
PNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQILEQTDIQGAL
SAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDRAKAEAEHDEHY
YNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEAS
DWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLALGNVW
LQTLHQPTRDREKEKRHQDRALAIYKQVLRNDPKNLYAANGIGAVLAHKGYFREARDVFA
QVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLARALFKCG
KLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVLNAVKELELAHR
YFSYLSKVGDKMRFDLALAATEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKEL
LRQKLLKEQEEKRLREKEEQKKLLEQRAQYVEKTKNILMFTGEVEGSKEKKRGGGGGRRS
KKGAGEFDEFVNDDSDEDLPMSRKKKKRKGSGSEQDGEEEEGERKKKKRRRPQKADEGSD
DEEHENGPRPKKRRPPKAEKKKAPKPERLPPSMKGKIKSKAIISSSDDSSDEDKLKIADD
GHARNSNSDSDDGEQQHSKRIVSDSDSDNRNKSGSEAGSPRRSSVRPSEEDSDSDRSARK
RRRSDSEQSDNESVQSGRSRSGGSENESRPASRSADSDRDSERGSDNEGSGRGSGNESEP
EGSNDEGSEGGSDDSD
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgttttcggtgattgagcttgacttcgatcagttacctgagggtgatgaagttataagt
atactgaaacaggagcacactcaactgcacatatggattgccttagcgctggaatactac
aaacaaggaaaaacagaagactttgtgaagctgttggaagctgcacgcatagatggtaac
ttggactatagagaccatgaaaaagatcagatgacgtgtctggatactctggcagcatac
tatgtacagcaggctcgaaaggagaagaacaaagacaacaagaaggagctcattacgcaa
gctaccttgttgtatactatggctgacaaaattatcatgtatgatcagaatcacttgttg
ggaagagcctgcttttgtctccttgaaggtgataagatggaccaagctgatgcacagttc
cactttgtgctcaaccagtctccaaataatattcctgcacttctcggtaaagcatgcatt
tctttcaacaagaaagattatagaggagcccttgcctactacaagaaagcattacgtacc
aatccaggttgcccagcggaggttcgattaggtatgggccactgcttcgtgaaactgaac
aagttttaaaaagctcgcttannnnnnnnnnnnnnnnnnnnnnagctaaattcaaaatgt
gtaggtgctttggttggactggcggttctggaactcaataataaagaggctgattccatc
aagaatggtgttcaactcctctctagggcttacacaattgatcccagtaatccaatggtg
ttgaatcacttggctaatcacttcttcttcaagaaggactatggtaaagtacaacacctg
gctcttcatgctttccataatacagaagttgaagcaatgcaggcggagagttgttatcag
ctggctagatcttttcatgtacaggaagattatgatcaagctttccagtattattaccag
gccactcagtttgcctcatcttcttttgtacttccattttttggattgggtcaaatgtac
atttatcgaggggacaaagagaatgcatcacaatgctttgaaaaagttttgaaagcctat
cctaacaattatgagactatgaaaatcctcggatctctttatgcggcttcagaagaccag
gagaaacgggatattgcaaagggacatctaaagaaagttacagaacaatatcctgatgat
gtagaggcatggattgagctggcccaaattctagaacagactgatatacagggtgcactc
tcagcctatggtacagccacacgcattctgcaagagaaagtacaggctgatgtcccacca
gagattttgaataatgtgggtgctctgcacttcaggctgggcaacctgggagaagcgaag
aaatattttttggcatcactggatcgtgcaaaagcagaagctgaacatgatgagcattat
tacaatgctatatctgtaacaacgtcctataaccttgccagactatatgaggcgatgtgt
gaatttcacgaagcggagaagctgtataaaaacattttaagagaacatcctaattacgtt
gattgttacttgcgcttgggagctatggctagggataaaggaaatttttatgaggcttct
gattggtttaaagaagcgcttcagataaatcaggaccatccggatgcttggtctctgatt
ggcaatcttcatttggctaaacaagagtggggtccaggacagaagaaatttgaaagaata
ttgaaacagccctccacgcaaaatgatacttattccatgctggctctcggcaacgtctgg
ttgcagactctacatcaacccacaagagacagagaaaaggagaagcgtcatcaagaccgt
gcattagcaatctacaagcaagtactcagaaatgatccaaagaatttatatgctgctaat
ggcataggagctgtcttggcgcataaaggatatttccgtgaagctcgtgatgtttttgcc
caagtgagagaggcaacagcagatatcagtgatgtgtggctgaatttggcacatatctac
gtagaacagaaacagtacatcagtgctgtgcagatgtatgaaaactgcctcagaaagttc
tataagcaccaaaatactgaagtattgttatatttggcccgggcgctcttcaaatgtggc
aaattacaggaatgcaaacaaactttgttaaaggccaggcacgtagcgccaagtgataca
gtccttatgtttaatgtggctttagtgctacaaagactagctacctctgtcctgaaagat
gaaaaaagcaatctaaaggaagtgcttaatgctgtgaaagaactggagctagcccacagg
tacttcagttacttgagtaaagtaggtgataagatgagatttgatttggcacttgctgct
acggaagccaggcaatgctctgacttactgagtcaggcccagtatcatgtggctcgggca
cgcaagcaggatgaagaagagagggagctgcgtgcgaagcaagagcaagaaaaggaactg
cttcgccaaaaactacttaaagaacaggaagagaagcgcctaagagaaaaagaagaacag
aagaaacttctggaacaaagagctcaatatgtggagaaaaccaagaatattctgatgttc
actggtgaagtagaaggatcaaaggagaaaaaacgtggtggcggtggaggcaggcgttcc
aaaaaaggagcaggggaatttgatgagttcgtcaacgatgatagcgatgaagatctgccc
atgtctagaaagaaaaagaagaggaagggcagtggtagtgaacaagatggggaagaagag
gagggtgagagaaagaagaagaagaggaggagaccccagaaggcagatgaggggagtgat
gatgaagaacacgaaaatggtcccagacctaaaaaacgacgtccacccaaagcagagaaa
aagaaggctcccaaaccagaacgtctgcctccttcaatgaaaggaaagatcaaatcaaaa
gccatcatttcatcaagtgatgattcttctgatgaggataaactcaaaattgctgatgat
ggacatgctcgtaatagcaacagtgattcagatgatggggaacagcagcacagtaaacgc
attgtttctgacagtgattctgataacagaaacaaatctggtagcgaggcaggtagtcca
aggagatccagtgtccgcccatctgaggaagattctgacagtgacaggtcggccagaaaa
aggaggcggtcagattcggagcagtctgacaatgagtctgtacagtcggggagaagtcgt
tctggtggttcagaaaatgaatctcgcccagcttctcgcagtgctgactcagacagagat
tctgagagaggatctgacaacgagggttctggcagaggatctggtaacgaatctgaacca
gaaggatccaacgatgaggggtctgaaggtggttcagatgacagtgattag
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