Charadrius vociferus (killdeer): 104293359
Help
Entry
104293359 CDS
T08577
Symbol
RC3H1
Name
(RefSeq) LOW QUALITY PROTEIN: roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cvf
Charadrius vociferus (killdeer)
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cvf03000
]
104293359 (RC3H1)
04121 Ubiquitin system [BR:
cvf04121
]
104293359 (RC3H1)
Transcription factors [BR:
cvf03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
104293359 (RC3H1)
Ubiquitin system [BR:
cvf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104293359 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
PaaA_PaaC
Vesi_VP2
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
104293359
NCBI-ProteinID:
XP_009891167
LinkDB
All DBs
Position
Unknown
AA seq
1136 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GGVDLPNRKTSALPNGIVSTGSTVTQLISRGTDSGYETALKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPARAPTDLPSVSVTKQLQMVPRGSQLYNTQQADMFYQDPRGA
APPFEPAPYQQGVYYPPQSMSRFVRPPPSAPEPGPPYLDHYPPYLQDRVVSPQYTQPQQY
PPMGQPIYPPHYDSRRVYPPVQPYQREEIVRGSPVPIEIPQAAVPSYVPESRDRYQQTEG
YCPVAPHLSQIRPSCHRVXRCVTLLSSFQPHPSLDELHRRRKEIMAQLEERKVISPPPFA
PSPTLPHPFHSEEYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARS
VEMANVDSKAMRDQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQ
AMAVQGATTKSIISDYSPYGTHGGWGGSPYSPHQNIPSQGRFNDRERLSMSDVAGHGKQL
PSAEREQQLRMELQQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPPPPPKWSG
MISSEQLSLELHQVEREIGKRTRELSMESQSSLDIKNKLGTTKQTENGQLEPQSKVPAED
LTLTFSSDVPNGSALTQENIGLLSNKTASLSLSEDPEGGGDNHDSQRAGVTPTSAP
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccaatttgcacacagacc
ttcgacgaaacaatccggaagcccatcagcttgggttgtggccacactgtttgcaagatg
tgcctcaacaagctccaccgtaaggcatgcccttttgaccagaccactatcaatacagac
attgaactgcttcctgtgaattcagccttgctgcaactagtgggtgctcaggttcctgag
cagcagccaattactctatgtagtggagctgaagataccaagcattatgaggagggcaag
aaatgtgtggaagaattagcgttgtacctcaaaccactcagcagcgcaagaggtgtgggt
cttaacagtactactcagagcgtgctaagtcgtcccatgcaaaggaaacttgtgacatta
gttcattgccagctagtagaggaagaagggcggatcagagccatgcgtgcagcacggtcg
cttggtgaaagaacagtaacagagctcattcttcagcatcaaaatcctcagcagctctct
tccaatctctgggctgcagtgagagccagagggtgccagttccttggaccagcaatgcaa
gaggaggctttaaagctggttctactggctctggaagacggatctgcgttgtcacgaaag
gtcttggttctctttgtggttcagaggctggagccgcgatttcctcaggcttctaaaact
agcattgggcatgttgtccagcttctttacagagcctcgtgctttaaggtgacaaagcga
gatgaagattcctccctgatgcagctgaaggaggaatttcggacttacgaagctctgaga
agggaacatgattcccagatagttcaaatagctatggaagcaggtttacgcattgcacca
gatcagtggtcctcactgttatacggagaccaatctcacaaatcccacatgcagtctatc
attgacaagttgcagaccccagcctcatttgcacagagtgttcaggaattaactattgct
cttcagaggactggagatccagctaacctgaatcgtcttcgacctcatctagagctcctg
gcaaatattgatcccagtccagatgctccacctccgacatgggaacaactggaaaatgga
ctagttgctgtgaggactgtggtgcatggcttagttgactatatccagaatcacagcaag
aaaggaacagatcagcaacagccgcctcagcacagcaagtacaagacatacatgtgccga
gacatgaaacagagaggaggatgcccccgaggggccagctgcacctttgcacattcacag
gaggagctagaaaaattccgtaaaatgaacaagcgtctggttcccagaagacccctgagt
gcctccctgggccagctgaatgaggtgggcctaccttcaggagctatcctctcggaggaa
gggggagtggacttgcccaataggaaaacttccgctctgccaaatggaattgtgtcaaca
ggcagcacggtgacgcaacttatttctcgagggacagactccggttatgaaactgctctg
aagccagggaagatggaccatctgagcagcagtgcccctggatcccctcctgacttattg
gaatctgtgcccaagagctctatttctgccttaccagtgaaccctcatcctgtgcccgct
cgggcaccaacagatctgccttcagtgtctgtcaccaagcagttgcaaatggtaccacga
gggtctcaattgtataatactcagcaagcagatatgttttatcaagatcctcgaggagct
gccccaccatttgaaccagcaccctaccaacaaggagtttactatcctcctcagtccatg
tctcgctttgtccgacctcctccatcagctcctgaacctggtcccccttatttagaccat
tacccaccctaccttcaggatcgtgtggtgagcccacagtacacgcaaccccagcagtat
cctcccatgggacaacccatatacccaccacactacgacagccgtcgcgtatatccccct
gtccagccgtatcagcgagaggagattgtccgaggaagcccagtacccattgaaattcca
caagcagctgtaccttcctacgtacctgaatccagagacagataccagcaaacagagggt
tattgcccagtggctccacatctcagtcagattagaccttcatgccacagggtatgaaga
tgcgtaacattgctgtcttcatttcagcctcatcctagcctggatgaacttcaccgtcga
aggaaagagatcatggcccagctagaagagaggaaggtgatttctccacctccttttgca
ccatcaccaaccctgcctcatccttttcattcagaggagtacttggatgaagacctgaag
gtagctgggaaatacaaaggaaatgactacagccagtactctccctggtcctgtgacacc
atcggctcctacattggaaccaaagatgcaaaacccaaagatgttgtggcagcaaggagt
gtggagatggcgaatgtagatagcaaagccatgcgtgaccagcgattagatatgcaacga
agagcagcagagactggtgatgatgacctcattccatttggagaccgaccaactgtgtca
agatttggggctatttctcgtacttccaaagcgatgtaccagaattctggtcccatgcag
gccatggcggttcagggagctaccaccaaatcaatcatttcagactacagtccttacgga
actcacggtggctggggaggctctccatattctcctcatcaaaatataccttctcaggga
cgtttcaatgacagggagagactgtccatgtcagatgtggctggtcatgggaaacagttg
ccctcagctgaacgagagcagcagctgcgcatggagctgcagcaagtagaccatcagatt
agccagcagacacaaatgcgaggactagaggctgttagtaacaggctgctgttgcagagg
gaggcgactaccctggcaggccaaccacagcccccacccccacctcccaagtggtctggg
atgatctcaagtgaacagctgagcttggagctacaccaggtggaaagggaaattgggaag
agaacccgtgagctgagcatggagagccagtcatcactggatataaaaaacaaactgggc
accactaaacagacagaaaatggacaattagaaccacaaagcaaggttccggctgaggac
ctcacattgacattcagcagtgatgttccgaatggatcagccttgacacaagagaacatt
ggcctcctgtcaaacaagacagcttctctcagcttgtcagaggaccctgagggaggagga
gacaaccacgactcccagagagcaggagttacgcccacgtctgctccatga
DBGET
integrated database retrieval system
