KEGG   Charadrius vociferus (killdeer): 104293517
Entry
104293517         CDS       T08577                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
cvf  Charadrius vociferus (killdeer)
Pathway
cvf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cvf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104293517 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cvf03041]
    104293517 (SNRNP40)
Spliceosome [BR:cvf03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    104293517 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    104293517 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR19_1st eIF2A Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 WDR54 WD40_like WD_LRWD1 Beta-prop_Nup120_160 PROPPIN
Other DBs
NCBI-GeneID: 104293517
NCBI-ProteinID: XP_009891326
LinkDB
Position
Unknown
AA seq 343 aa
MAGFGADGAGCAGCAPCSPPRHPLTWLTHCIPQGPPRCSSLQAPIMLLSGHEGEVYCCKF
HPNGNTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVA
VWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTY
QVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNA
MDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAGGSADRFVYVWDT
TSRRILYKLPGHAGSVNELAFHPEEPIILSASSDKRLYMGEIQ
NT seq 1032 nt   +upstreamnt  +downstreamnt
atggcggggtttggggccgatggggccgggtgtgctggctgtgccccttgttcccctcca
cgtcatcccctcacctggctcacccattgcatcccccagggcccaccgcgctgctcgtcc
ttgcaggcccctatcatgctgctctctgggcacgaaggagaggtgtactgctgcaagttc
caccccaacggcaacactctcgcctccgccggctttgacaggctcatcctgctgtggaac
gtctatggggactgcgataactatgccaccctgaaaggacacagcggggcagttatggag
cttcactataacacagatggcagcatgctcttctcagcatccacagacaaaaccgtggca
gtgtgggatagcgagactggagagagagtgaagagactgaagggccatacctcattcgtt
aactcctgttacccagcgaggcgaggaccccagcttgtctgtacaggcagtgatgatggg
acagtgaagctgtgggatatcaggaaaaaagctgctgtccagacatttcagaacacgtac
caggtcttggctgtaactttcaatgacaccagtgatcagatcatatctggaggcatcgac
aacgatattaaggtgtgggaccttcgccagaacaagctcacttacacgatgagaggacac
gcggactcggtgacaggcctcagtctcagttcggaaggctcctacctgctctccaacgca
atggacaacacagttcgcatctgggatgtgcgaccgtttgcccctaaagagagatgtgta
aagattttccaggggaatgtccataattttgaaaagaatcttctgaggtgctcttggtcc
ccggatgggagcaaaattgcagggggatcggctgacaggtttgtctacgtgtgggacacc
acatccaggaggattttgtacaagctgccaggccacgctgggtcggtgaacgaactggct
ttccatccggaggaacccattatactctccgcatccagcgacaaaagactgtatatgggg
gagatccagtga

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