Charadrius vociferus (killdeer): 104293554
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Entry
104293554 CDS
T08577
Symbol
COL2A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf04510
Focal adhesion
cvf04512
ECM-receptor interaction
cvf04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104293554 (COL2A1)
04518 Integrin signaling
104293554 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104293554 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cvf00536
]
104293554 (COL2A1)
Glycosaminoglycan binding proteins [BR:
cvf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104293554 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
104293554
NCBI-ProteinID:
XP_009891367
LinkDB
All DBs
Position
Unknown
AA seq
919 aa
AA seq
DB search
MGTGMEMGVKGEPGIAGFKGEQGPKGETVSAGRGGAPGERGPAGLAGPKGATGDPGRPGE
PGLPGARGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGP
AGPAGERGEQGAPGPSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGE
RGSPGAQGLQGPRGLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGD
RGDVGEKGPEGAPGKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPVSAIP
PHPPRGAAASPQGADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGAR
GAQGPRGDAGPPGRAGDPGLQGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGLP
GQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGNPGSDGPP
GRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGAR
GMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGPP
GPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGL
GQTEKGPDPIRYMRADEAARSLHPCLLPCLLPSXPSPPASRGQPTPRCSLLXPPKPHVHT
PFLLPAVGDYWIDPNQGCTLDAIKVFCNMETGETCVYPNPSSIPKKNWWTSKTKDKKHVW
FAETINGGFHFSYGDEDLAPNTANIQMTFLRLLSTEGSQNVTYHCKNSIAYMDEETGNLK
KAILIQGSNDVEIRAEGNSRFTYSVLEDGCTKHTGKWGKTVIEYRSQKTSRLPIVDIAPM
DIGGADQEFGVDIGPVCFL
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atggggacagggatggagatgggagtgaagggagaacccggcatcgcgggcttcaaaggc
gaacagggaccgaagggcgagacggtgagtgcggggagggggggtgctccgggcgagcgt
ggccccgctggcctcgccggtcccaaaggagccaccggtgaccccggtcgtcccggagag
cccgggctgcccggagccaggggagctcgcggccagcccggcgtgatgggtttcccgggt
cccaaaggcgctaatggcgagcctggaaaagccggtgagaaaggactccccggtgccccg
ggattgaggggtctccctgggaaggatggtgagacgggagctgccggccccccgggaccc
gccggtcccgcaggtgagagaggagagcaaggagcccccggtccctccggcttccagggg
ctgcccgggccaccaggtccccctggagagagcggcaaacccggagatcagggtgttcct
ggagaagctggtgcccccggtctcgtcggtcccagaggtgaacgcggcttccccggtgaa
cgtggctctcctggcgcacaagggctgcaaggtccccgcgggctccccggcacgccgggc
accgacggacccaagggtgcaactggaccagccggccccaacggtgcccagggtcccccg
gggctgcagggaatgcccggtgagagaggagcagccggcattgccggtcccaagggagac
cggggagatgtcggagagaaaggccccgagggagcccccggaaaggacggcgcacgcggt
ctgacaggtcccatcggtccccccggccccgctggccccaacggcgagaagggtgaatcc
ggccctcctggtccatccggcgctgctggtgcccgcggtgcccccgtaagtgccatcccc
ccacacccccccaggggggcggctgcttccccgcagggtgccgacgggcaacctggtgcc
aaaggcgaacaaggagaacccggacagaagggtgacgccggtgctcccggtccccaaggt
ccctccggcgcacctggcccacagggtccaactggtgtaactggtcccaaaggagcccgg
ggtgctcagggtcctcgtggcgatgccggtcccccgggccgtgccggtgaccccggtctc
caaggccccgctggcccccctggcgagaaaggcgaacccggcgaggatggccctgcgggt
cctgacggtccccccggtccccaaggtttggcaggacaacgtggcatcgtcggtcttcct
ggccagcgtggtgagagaggcttccccgggctgccggggccatcgggcgaacctgggaaa
caaggagcacccggctctgcgggcgaccgagggccccccggccccgtgggtccccccggt
ctgacgggtcccgccggcgaacctgggcgcgagggtaaccctggctctgatggacccccc
ggcagagacggcgcagccggcgtgaagggtgatcgtggtgagaccggtcctgtgggtgcc
cccggcgctcctggtgcccctggtgctcccggccccgtcggtcccaccggcaaacaagga
gacagaggcgagacgggtgcacaaggtcccatgggtccctccggtcctgctggcgctcga
ggcatgccgggtcctcaagggcctcgcggtgacaagggtgagacgggagaggctggagag
agagggctgaagggccaccgtggcttcaccgggctgcagggtcttcctggaccacccggt
ccttctggagaccaaggtgctgctggtcccgcgggtccctccggtcccaggggtcccccc
ggccccgtcggcccctctggcaaagacggctccaacggcatgcccggccccatcggtccc
cccggcccccgcggacgaagcggcgaaccaggtcctgcgggtcctcctggaaacccaggt
ccccccggtcctcccggccccccaggcaccggcatcgacatgtcagctttcgctggcttg
ggtcagacggagaagggtcctgaccccatccgatacatgcgagcggacgaggccgctagg
agcctccacccctgcctcctcccctgcctcctcccctcctgaccctctcccccagcctct
agaggacagccaactccacgatgctctttgctctgacctccaaaacctcatgttcacaca
ccgtttctcctccccgctgtaggagactactggatcgacccgaaccagggctgcaccttg
gacgccatcaaagttttctgcaacatggagacgggcgagacctgcgtctaccccaacccc
agcagcatccccaagaagaactggtggaccagcaagaccaaagacaagaagcacgtctgg
ttcgcagagaccattaacggcggtttccactttagctacggcgatgaagacctggctccc
aacactgccaacatccagatgaccttcctccgcctcctgtccaccgaaggctcccagaac
gtcacttaccactgcaagaacagcatcgcctacatggacgaggagacgggcaacctgaag
aaagccatcctcatccagggatccaacgacgtggagatcagagctgagggcaacagcagg
ttcacgtacagcgtcttggaggacggttgcacgaaacacactggcaaatggggcaagaca
gtcattgagtaccgatcgcagaagacctcgcgcctgcccattgtagatattgcacctatg
gacattggtggagccgatcaggagtttggcgtggatattggcccagtctgcttcttgtaa
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