KEGG   Charadrius vociferus (killdeer): 104293904
Entry
104293904         CDS       T08577                                 
Symbol
COL9A3
Name
(RefSeq) collagen alpha-3(IX) chain
  KO
K08131  collagen type IX alpha
Organism
cvf  Charadrius vociferus (killdeer)
Pathway
cvf04510  Focal adhesion
cvf04512  ECM-receptor interaction
cvf04518  Integrin signaling
cvf04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cvf00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    104293904 (COL9A3)
   04518 Integrin signaling
    104293904 (COL9A3)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    104293904 (COL9A3)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    104293904 (COL9A3)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:cvf00535]
    104293904 (COL9A3)
Proteoglycans [BR:cvf00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   104293904 (COL9A3)
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 104293904
NCBI-ProteinID: XP_009891753
LinkDB
Position
Unknown
AA seq 675 aa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NT seq 2028 nt   +upstreamnt  +downstreamnt
atggctggattctccgctctcgggcttctcctcctatgtcagctgttggccacaacggca
gctcagagagtaggaccacaagggcctcctggaccacgaggaccccccggaccatctggc
aaggacggcatagacggagagccgggccctcctggtttgccaggcccaccggggccaaaa
ggtgcaccagggaagcctggagcggctggtgaagctgggttgcctggccttcctggggtg
gatggtttaacaggaactgatggcccacctggcccaaacgggcctccaggagaccgtggt
gcattgggaccctccgggccacctggaccagctggcaaaggactaccaggacctccaggg
cctccaggacccagtggactccctggtggaaatggatttcggggtcctcctggacctttt
ggtctgccaggattcccagggcctcctggaccacccggacctcccggtcttccaggcacc
tttcccgagggcggtgtggacctccagtgcccagctctgtgcccaccgggtcctccgggt
cccccaggactgccagggttcaagggacacactggtcacaaaggagaacctggtgaaata
ggaaaagaaggagaaaagggcagccctggccctcctggtcctccaggcatccccggcagc
gtcggcctgcagggcccaagaggactaagaggcctccctgggccaatgggtccggctggt
gacaggggtgacatcggtttcagagggccacctggaatcccaggacctccagggaaagct
ggagaccaaggaagcaaaggacctcaaggattcagagggcccaaaggcgatactggtaga
cctggaccgaaaggaaacccaggggctcgtggactcataggagaacctggcatgcctggc
aaggatggacgagatggggctcctggactcgatggtgagaagggtgatgcagctcgcatg
ggtgctcctggagagaagggaccaaacggactgcctggtctgcctggaagagcaggtatt
aaaggctcaaagggtgaaccaggcagccctggcgagatgggagaggcgggtccctccgga
gagccaggcgtccctggcgatgttggtattccgggtgagagaggtctgccgggacccaga
ggagcgactggtccacttggtcttcaaggcccgatgggagcccccggtgtcagaggtttc
cagggtcccaaaggtgccagtggtgaacctggcctgcctggtccaactgggattcgtgga
gagttaggtgacaggggtccgactggtgttcctggtcccaaaggtaaccagggcattgct
ggagcagatggcctcccaggtgacaaaggagaactgggtccctttggtccccccggccaa
aaaggagagccaggaaaaagaggagaacttggtccaaaaggtgtccaaggaccgaatggg
acagccggagtaccagggatcccaggacatccagggcccatgggccatcagggggagcaa
ggcattcccggcatcacggggaaacctgggcctcctggcaaagaggccagtgaacagcgt
attagagaactctgtggggaaatgataaatgatcaaattgcacagttggctgctaatctg
agaaagcccttgtctcctggaatgacgggtcgtcccggcccagctggtcccccaggtcct
cctggagctatgggaagtgttgggcatcctggtcctcgtggtccgcctggatacagaggg
ccaacaggagaacttggtgatcctggtcccagaggtgacgctggcgaaaagggagataaa
ggaccggttggtcagggtattgatgggcctgacggcgatcaaggacttcaaggaccacct
ggtgtacctggaattactaaaaatggtcgggatggtgctcagggtgaacccggtcttcca
ggggatcccggtactcctggtgctatcggggctcagggaactccaggcatatgtgacacg
tcggcttgcatgggagctgttggagtatcaacttccaaaaaatcataa

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