Charadrius vociferus (killdeer): 104294156
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Entry
104294156 CDS
T08577
Symbol
DDX60
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
cvf
Charadrius vociferus (killdeer)
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvf03019
]
104294156 (DDX60)
Enzymes [BR:
cvf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104294156 (DDX60)
Messenger RNA biogenesis [BR:
cvf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
104294156 (DDX60)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
RuBisCO_small
Motif
Other DBs
NCBI-GeneID:
104294156
NCBI-ProteinID:
XP_009892035
LinkDB
All DBs
Position
Unknown
AA seq
1823 aa
AA seq
DB search
MDSAEDYFKKVIHSDANENASNDDKDSEKIGFIPTKADEESGSTSDSDEEDETSDKAEAD
VIKMLKEEEDREKETPDLDYHNAYSILTTEEGIHQASQTEGKDFSILQDKCDSQSPEIRR
HLEFLKKLRLHSWASLSRAEYVSLLKDFVESEFFVIDGDSLLLMFLDTKTQYLNFFYQIE
CFLQDFTEKGAKYVIVFFKDAEQLYFPYPHFLSLRTALIEHLRHNTGTAVHTEFSNCLSS
KWEIFLKKSYPYFIIVSDIGLNSLQTDFLSILIAHSLSKKVNVVLASGQEYDILRIYGYH
VQSVYQHRLFFQKYQQDLRYACENLVRYKEPLMCLNEHLKLSLKSIQEEVHQTVHLLKKL
WPKGSDIRRVVCVLTCAVGLKIYSNVLKNPNTSMGGKTKQSARGRSKPLSQEQAADLCRM
QCLTVAFLLHMPLSQRAQIRIMKSCWTKQVLPLIKMQQLCTHFSLTQLSDTNGWKLDLTY
LPDLNDDSLLRNIAHYYEVEYTKGLEFKKELGKEMENEYRCLWDTVTKLAAKYSFGDAFP
IRKTSQLFLEQEQTLFRDYKEEIPKIGLISVKSDLVENYAGDVLKDLPVLESNDPAITSL
IKYKEFDELRHWHSGRPLTEEYERVQRNADAQSKHPEERRQIQKLQTFYHFYGSTLENSA
SKFIVYKEDVSGNDSAAVKKTQKKHKSKAETIIEENNRRRKTEEEKKEQEQWKALCIPAE
KEIKANITVGINKLEKLLKTLKSKSVKFSVEMTGLSACLDVWKKHCKEQGEKSKDLSKAV
EVMRRIHVLLEKYQDLLEEPHLLKLTKYLRLLGFENLACSLSGQQKEGRLHSDHTISKYA
IKVGPARFQLQYMDYYLLREERNDPDPRVQHFIPDTWQRELLDAVDNNESAVIVAPTSSG
KTYASYYCMEKVLKTSNDGVVVYVAPTKALVNQVVGTIYSRFTKKLPDGLVVCGVFTRDY
RNDVMNSQILVTVPQCLEILMLSPRCQKWTKRIQYVIFDEVHCLGGEIGAEVWEHLLVTI
RCPFLALSATVSNPEHLTEWLQSVKRYWRHAEDKIERSSTISERNFTRKCKVKSKVPEQK
KSYRVRLVLYEERYNDLEKYVCSLKGSDFIIEHCHPCAALTVNHIENYGIPSDLSLSPRE
SIQLYDAMVKVWQEWPRAQELDPEEFVSFKNKVVIKKPDVRKYEQELKKELSKWIVLGQR
QKVNELLKHLKPKPVDCSEQEKWKHFASFVEKLHEMNKLPAIFFIFNVNSVECAARNVFL
SLLRKQKSEQHPNTEREKEHLSDELRKVKKQLIKLNSRDTKKLSPRTMDNMTFLLSTKQQ
LERRLKRLTAIPSACTYADPKAVDEDTLRKIFHRVKFERRGYQQQMMALRGIGYHHRSMN
AKERQVVEMLFRMGYIKVVTATSTLALGINMPCKSVVFAEDSVFLDALNYRQMSGRAGRR
GQDMIGNVFFYDIPLPKVERLLKSNVPQLKGQFPLTITLILRLMLLAAKADDKADARAKA
LSVLKHSLMSFRKERYAAILKIYFMFSLQFLIKEGYLDQEGNPRGFAGLVTHLYYHEPSN
FVLVSFLVKGLFHKLCQPIKGSTVFSDDVLETLVLILANLFGRKYLPACAMKYKRTFCQS
KVFLEDLPKDFADAVKEYNTKVEENFAHFLLTTAKLADMEQEYRLPLSRTDFTSKKWHGS
ELASYLMDNTKSISAISPFACLSGVVDNNLLHGEIVNKAVLRSLGVNVTNCPLLYLNKYD
NQGRKRPLNAYALDFYKHGCLVALTTDNWLVEGDAYHLLKDFSLLIKSIGTSLSELCDDP
NDNVLLAFQQLGKIYAEKLESVK
NT seq
5472 nt
NT seq
+upstream
nt +downstream
nt
atggattctgcagaagattatttcaagaaagtcattcatagtgatgcaaatgagaatgct
agtaatgatgacaaggacagtgagaaaataggcttcattccaacaaaggcagatgaagag
agtgggagtacaagtgacagcgatgaggaggatgagaccagtgacaaagcagaagcagat
gttatcaagatgcttaaagaagaggaagacagagaaaaagaaaccccagacctggattac
cataatgcttatagtatcttgaccactgaagaagggatacatcaggcatcacaaactgaa
ggcaaggatttcagcattctccaggacaaatgtgattcccaaagccctgaaattagaaga
catcttgaatttctgaagaagttgaggctacacagttgggcatccctatcaagagctgag
tatgtcagtctgttaaaagactttgttgagtctgaattctttgtgatagatggggattcc
ttactacttatgtttttagatacgaaaacacaatatctaaacttcttctaccagattgaa
tgcttcctgcaggatttcactgaaaaaggagcaaaatatgtcattgttttcttcaaggat
gcagaacagctgtactttccgtatcctcattttctttccttacgtactgccttaatagaa
cacctgaggcataacacaggcacagctgttcatacagaattttccaattgtttatcgtcc
aaatgggagattttcctgaagaaaagctatccttacttcatcatcgtatctgacatagga
ctgaactctctccaaacagactttttatctattttaattgctcattcattgtcgaagaaa
gtcaacgttgtgcttgcttcaggacaggagtatgatattcttagaatttatggatatcat
gttcagagtgtgtatcaacacagattattttttcaaaagtatcagcaagatctgcgatac
gcctgtgaaaacctagtcagatacaaagaaccattgatgtgtctaaatgaacatctcaaa
ctgagtctgaaaagcatacaagaagaggttcatcagactgtccatctgttgaaaaaactg
tggcctaaaggatctgacattcgacgtgtggtctgtgttcttacttgtgctgtgggatta
aaaatatacagcaacgtgttgaaaaatccaaatacttccatgggagggaagacaaagcaa
tcagcaagaggaagaagtaaacccctatctcaagaacaagcagctgacctctgcagaatg
caatgtcttacagtcgcctttcttcttcatatgcctctttcacagagagctcagattagg
atcatgaaatcctgctggactaagcaagttttaccattaataaaaatgcaacagttgtgt
acgcatttttctctgacacagctaagtgatacaaatggttggaagttggatttaacttac
ctgcctgacttaaatgatgattcactgctcagaaatatagcacattactatgaggtcgaa
tacactaaaggattagagttcaaaaaggaattggggaaagaaatggagaatgaataccga
tgcttatgggacaccgtaacaaaattggctgcgaaatacagttttggagatgctttccca
atacgaaagacttcccaactatttcttgaacaggaacagacattatttagagattataaa
gaagaaattcctaagattggacttatctcagtgaaatctgatcttgttgaaaattatgct
ggagatgttttgaaagacctacctgttttagaaagcaatgatcctgcaattacttcactt
attaaatacaaggaatttgatgagcttcgtcactggcattctggcagacctttgactgag
gaatatgagcgagtgcagcgcaatgctgatgcacaatccaaacatccagaagaaagaaga
caaatacaaaagttacagactttttatcatttttatggaagcactttagaaaacagcgct
tcaaaatttattgtatataaagaggatgtgtcagggaatgatagcgctgctgtcaaaaag
acacaaaaaaagcataaaagtaaagcagaaacaattatagaggaaaacaacaggcgtcgg
aaaactgaagaagaaaagaaagaacaggagcaatggaaagccttgtgtataccagctgaa
aaggaaataaaagcaaatataactgttggaataaataaattggagaagttgctcaagacc
cttaaaagtaaatctgtgaagttcagcgtagaaatgacaggactgtctgcctgtttagat
gtgtggaagaaacactgcaaagaacaaggtgagaaatctaaagatttaagcaaagctgtt
gaagtcatgaggagaattcatgtcctccttgaaaaatatcaagatctcttggaggaacca
catctactaaagctgaccaaatatctaagacttcttgggtttgagaatttggcatgctct
ctgtctggccagcaaaaggaaggaagattacatagcgatcacactataagcaagtatgct
atcaaagtgggtccagctcgctttcagctgcagtacatggattattacttgctcagagaa
gagagaaatgatccagatccccgagtgcagcatttcataccagacacgtggcagcgagaa
cttcttgatgctgtagacaataatgagtctgcggtcattgtcgctcccacttcatcagga
aaaacatatgcatcatactattgtatggaaaaagttctaaaaacaagcaatgatggagta
gttgtgtatgttgctcctacaaaggcccttgtaaaccaagtggtgggaactatatacagt
cgattcaccaagaagcttccagatggattggtagtgtgtggagtcttcacacgagattat
cgcaatgatgtcatgaattctcagatactagtgactgtgcctcaatgtttagaaatcttg
atgctgtctcctcgttgccagaaatggaccaaacggatacaatatgttatatttgatgag
gtccattgtcttggtggtgaaattggagcagaggtttgggagcatcttctggtaacaatt
cggtgtccatttttggcactctctgctactgtcagtaacccagaacacctaactgagtgg
ttacagtctgtgaaaaggtattggcgacatgctgaggataaaatagaaagaagctctaca
atctctgaaaggaactttacaagaaaatgtaaagtgaaatctaaagtaccagaacaaaag
aaatcatatcgtgttagactagtcttgtatgaagaaagatacaatgatttggaaaagtat
gtgtgttctctaaagggcagtgattttatcattgaacattgccatccatgtgctgcgtta
acagtcaatcacattgagaactatggtattccttctgatctttctctgtctccacgagag
agcatccagctttatgacgcaatggtgaaagtctggcaagagtggcccagggcacaggag
ctagatcctgaggagtttgtctctttcaagaataaagtagtaataaaaaagccagatgtg
aggaaatatgaacaggaactgaaaaaagaactaagcaaatggattgtgcttggccaaaga
cagaaggtgaatgagctactgaagcaccttaagccaaaacctgtggattgctcagaacag
gaaaagtggaagcattttgcaagctttgttgaaaaattgcatgagatgaataagttgcct
gccatatttttcatatttaacgtgaattcagtggaatgtgcagccaggaatgtattcctc
agtttgctgagaaaacaaaaaagtgaacaacaccctaatactgagagggaaaaagaacat
ttgagtgacgaactaagaaaagtgaaaaaacagctaataaaattgaactctcgggatacc
aaaaagttgagccccaggacaatggacaacatgacatttcttttgagtacaaaacaacag
ttagaaaggagacttaaaaggctaactgccatcccttctgcatgtacctacgctgatcct
aaagcagtggatgaagatactttgaggaagatttttcatcgagttaagtttgagagaaga
ggttatcagcagcaaatgatggcactgaggggcattgggtatcatcatagatctatgaat
gccaaggaaagacaagtagtggagatgcttttcaggatgggatatatcaaggtagtcaca
gctacttcaacacttgctctaggaatcaacatgccatgtaaatctgtcgtctttgctgaa
gattctgtctttttagatgccctaaattacaggcagatgtcaggacgtgctggaagacgg
ggacaagatatgattggaaatgtgttcttctatgatatcccactgcccaaagttgaaaga
cttctaaaatccaacgtacctcagttgaaaggccagtttcctctgactattaccttgata
ctgagactcatgctgttggctgcaaaggctgatgacaaagcagatgccagagcaaaggca
ttgtcagtgttgaagcactcactgatgtcattcagaaaagaaagatatgctgcaatatta
aaaatttattttatgttttccttgcaatttcttatcaaagagggctacttggatcaagaa
ggtaaccccaggggatttgctggacttgtcacacacttgtactatcacgaaccttcaaat
tttgttttagtgagctttcttgtgaaaggtttattccacaaattgtgccagccaattaaa
ggctcaactgttttctcagatgatgtcctggaaacgctagtgctcattctagcaaactta
tttgggagaaaatatcttccagcctgcgcaatgaaatataaacgcacattttgccagtca
aaggtctttttagaagatctgccaaaagactttgcggatgctgtaaaagagtacaacacc
aaagtagaggaaaattttgctcattttcttctgacaaccgccaagctggcagatatggaa
caagaatacagacttccactgtcaaggacagatttcacatctaagaagtggcatggctct
gaactagcatcttatttgatggacaacaccaaaagcatatctgccatctcaccttttgca
tgtttatctggagtggttgataacaacctgttgcatggggagatcgttaataaagctgtc
ttacgttccctcggagttaatgtcacaaactgccccttgctttatttgaacaagtatgat
aatcaaggaaggaagaggccactcaatgcatatgcactggacttctataagcatggttgc
ttggttgcattgacaactgataactggttagttgaaggagatgcttaccacttactcaag
gatttttcactcctcattaagtctattggaacatcactgagtgaactgtgtgatgatcca
aatgacaacgttctactggcatttcaacaactcggtaaaatctatgcagagaaactggag
tctgttaaatga
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