Charadrius vociferus (killdeer): 104294433
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Entry
104294433 CDS
T08577
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104294433 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvf03041
]
104294433 (DHX38)
Enzymes [BR:
cvf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104294433 (DHX38)
Spliceosome [BR:
cvf03041
]
Complex C
Other components
Step II factors
104294433 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
PhoH
SRP54
Microtub_bd
AAA_30
AAA_16
SLFN-g3_helicase
AAA_7
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
104294433
NCBI-ProteinID:
XP_009892341
LinkDB
All DBs
Position
Unknown
AA seq
749 aa
AA seq
DB search
MGIKKEEEKDEMVTEDGKVDYKTEQKFAEHMKEKSEASSEFAKKKSILEQRQYLPIFAVQ
QELLSILRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVS
EEMGVRLGEEVGYAIRFEDCTSEKTVIKYMTDGILLRESLREADLDNYSAIIMDEAHERS
LNTDVLFGLLREVVARRSDLKLVVTSATMDADKFASFFGNVPIFHIPGRTFPVDILFSKT
PQEDYVEAAVKQALQVHLSGAPGDILVFMPGQEDIEVTSEQIVEHLEELEKAPALAVLPI
YSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMD
ALQIYPISQANANQRAGRAGRTGPGHCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLL
KSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKM
LIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQVREKFAVPESDHLTYLNVYLQW
KNNSYSTLWCNQHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDVVRKCICAAYF
HQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDG
EWLAELGPMFYSIKHAGRSRQENRRRAKEEVSAMEEEMALAEEQLRARREEQERRNPLGS
ARSTKIYTPGRKEQGEPLTPRRTPARFGL
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggggatcaagaaagaagaggagaaggatgagatggtgacagaagatggcaaagtggat
tacaagactgagcagaagtttgctgaacacatgaaggaaaaaagtgaagccagcagtgag
ttcgccaagaaaaaatcaatcctggagcagcgacagtatctgcccatctttgctgtgcag
caggagctgctctccatcctcagagacaacagcatcgtaattgtggtgggggagacaggg
agtgggaagacgacacagttgacacagtacctccatgaagatggctacacagactatggc
atgattggctgcacccagccccgcagagtggcggccatgtcagttgccaagcgggtcagt
gaagagatgggggtgcgcctgggagaggaggtgggctatgccatccgctttgaggactgc
acgtctgagaaaacggtgatcaaatacatgacagatgggatccttcttcgtgagtcactg
cgagaggctgacctggacaactacagtgctatcatcatggatgaggcacatgagcgctca
ctcaatactgacgtgctctttggcctgcttcgggaggtggtggcccgacgctcagatctg
aagcttgttgtcacctcggccaccatggatgcagataagtttgcctccttctttgggaac
gttcctattttccacattcctggacgcactttccctgttgatattcttttcagcaagacc
ccacaagaggattatgtggaggctgcagtgaaacaagccctgcaggtccatttgtctggt
gctcctggggacatccttgtcttcatgcctggacaggaagacatagaggtgacctcggag
caaattgtggagcaccttgaggagctggagaaggcgcctgctcttgctgtactgcctatc
tattctcagctaccgtcagacttgcaggccaagatcttccagaaggctccggatggggtt
aggaagtgcattgttgccactaacatagcagagacctcactgacagtggacggcatcatg
tttgtgattgactctggctactgcaagttgaaggttttcaacccccgtataggcatggat
gcgctgcagatctaccccatcagtcaagccaatgccaatcagagggcaggccgagctggc
cgaacaggcccaggccactgcttcaggctctacacccagagtgcctacaagaatgagctg
ctgacaaccacggtgcccgagatccagcgcaccaaccttgccaacgtagtgcttttgctg
aagtccctgggtgtgcaggacctgctgcagttccacttcatggatccaccccctgaagac
aacatgctgaactccatgtaccagctgtggatcctgggggccttggataacacaggtggt
ctgacctcaacaggacgtctcatggtggagttcccactggatcctgcactctccaaaatg
ctcattgtctcctgtgacatgggttgcagctctgagatcttgctcatcgtctccatgttg
tctgtgcctgccatcttttatcgtcctaagggccgagaggaagagagtgaccaagtgcgg
gagaaatttgctgttccagagagtgatcacttgacttatctgaatgtttacctgcagtgg
aagaacaacagctattctacactgtggtgcaaccagcacttcatccatgccaaggccatg
cggaaggtgcgggaggtgcgtgcccagctcaaggacattatggtgcagcagcggatgagc
ttagcgtcctgtggtaccgactgggatgttgtcaggaagtgcatttgtgctgcctatttc
catcaagctgcaaagctgaagggcattggggagtatgtgaacatccgcacaggcatgccc
tgccacctgcaccccacgagctccctgtttggcatgggctacacaccagactacattgtg
tatcatgagttggtcatgaccaccaaggaatacatgcagtgtgtcactgctgtggatgga
gagtggctggcagagctgggccctatgttctacagtatcaaacatgctggcaggtcgcgc
caggagaaccgccgccgtgccaaggaggaagtgtctgccatggaggaagagatggctttg
gctgaggagcagctgcgtgcccgtcgggaggagcaggagcgccgtaacccactgggcagt
gcaagatccactaaaatctacacccctgggcggaaggagcagggggagcccctgacgcca
cgacgcaccccagcccgctttggactctaa
DBGET
integrated database retrieval system
