Charadrius vociferus (killdeer): 104294823
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Entry
104294823 CDS
T08577
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104294823 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvf03019
]
104294823 (EDC4)
Messenger RNA biogenesis [BR:
cvf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104294823 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
104294823 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
Beta-prop_HPS5
WD40_CDC20-Fz
WD40_Prp19
NBCH_WD40
WDR55
Motif
Other DBs
NCBI-GeneID:
104294823
NCBI-ProteinID:
XP_009892785
LinkDB
All DBs
Position
Unknown
AA seq
1414 aa
AA seq
DB search
MVSASGYPVAAEAFCVHSVVADLMAGSVNENQRPSNSYNGDLNGLLVPDPIVAGDGPSLA
KPVHRSVSLGALQEKQVICLSGDDSSTCVVISAKDVEIVASSDSSITSKARGSNKVKIQP
VARYDWEQKYYYGNLIAVSNSYLAYAIRVASNGSAMVRVLSVSTAERTLLKGFTGGVADL
AFAHLNSNQLACLDEAGNLFVWRLAMDKEKIQEEILVHIKRPDNTPLNTSRRIIWCPFIP
DENEESGEEGSQTLALLHEDRAEVWDLDIIRTNNSSWPVEVPSIKEGFIVVKGHSTCLSE
GALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQDP
EVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSMSILPSLKVCLDLSAEYLI
LSDVQRKVLYVMELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLPAEE
ESDNLSVEGAQGAGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDMSASMPSHSSHE
EFAFPDHMADLNTEGLGSEKGSVHGSQPDLRRIADLPVPADFLSLSNDAKPKLMTPDAFM
TPSTSLQQVSAAPSGLCQQAEIAVSPGSSVSSLTAVTAMSSTSVTDASMPRPSEDLTVSP
KMQLDTSLTLSSSGSSLQTSPRSHSVLIPGLPDKLTPKAPIPVTPGNPSLALELQEVEPL
VVPQASPTRERSPDVISSASTAMSQDIPEIASETLQRSFAAAPSGLPAEVLEPSHHADSM
ASAASALHLLSPRNRHNSEHSHHSLDMPPVEVDRLNAPSLLETALTQENASSDSVVSQPW
PAAPDITRETRNSMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASL
ASTSGGFGAKASTQRLPVKDWKAKASPRASPKLKRKGKKDDGDVNQSPRSSNNQVTPEFQ
DELMCILRSQQRELTELRQNQMELLQRLTDHLDAIQSSLMGHVERVIDSQQEQEQRRLDR
ALTEGQQRNGQLQEHLSQQLSQSLSTAVCNRLERTIREEMKKTVPQCISKSMDPIAGQLS
NTIAAKLTAVEGTLKESITKLVKSKNLTDTIVRATADTLQGPIQSAYREAFQSVVLPAFE
KSCQSMFQQINDTFKQGTQEYIQQLETHLKNKKVREQEARDPLLNQLRQLIGTFQSTTEQ
LAATVAASVHAEVQHQLHIIVGNMQESILAQVQRVIKGEVSLAMKEQQAAVTSSIVQAMR
SAAGTPIPSAHLDFQSQQTHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDTQQVFG
QHPCPLSQPVLLSLIQQLSSDLGTRTELKLNYLEEAVMHLDHSDPITRDHMGSVMNQVRQ
KLFQFLQVEPHNTLSKPARRLMIMLQGLVTPGMT
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atggtctctgcatcgggataccctgtcgctgcagaggctttttgtgtccatagtgtagtt
gctgatttaatggcaggttcagtgaatgagaaccagagaccgtcaaattcgtataacgga
gacctgaatggactgctggtgcctgatcccatcgtggccggcgatggaccttctttggct
aagccagtgcatcgcagcgtttctctgggagccctgcaggagaagcaagtcatctgcctt
tccggtgatgacagctccacttgtgtagtgatatcagcaaaagatgtggagatagtggcc
agcagtgattccagcatcaccagtaaggccagagggagtaataaggtgaaaatacagcct
gttgctagatatgactgggagcagaaatactattatggcaatctgatagctgtgtcaaac
tcttacctggcttatgccattagagttgccagtaacggctccgctatggtgcgggtgttg
agcgtcagcactgctgagcggaccttgctgaagggcttcacaggcggtgtggcagacctg
gcttttgctcatctcaactccaaccagctggcgtgcctggatgaggccggcaaccttttt
gtctggcgcctggccatggataaagaaaagatccaagaggagatcttggtgcacatcaag
cgacctgacaataccccattgaacacctctcgaagaatcatctggtgccctttcatcccg
gatgagaatgaggagagtggtgaagagggaagtcagacgttggcgttgttgcatgaagac
agggcagaggtgtgggatttggacattatccgaacaaacaacagctcctggccggtggaa
gtgcctagtatcaaagaaggcttcatcgtagtgaaaggccacagcacgtgcctaagcgag
ggagcgctttctccagatggaactgtgttggccacagcaagccatgatggttttgtcaaa
ttctggcagatctatattgagggtcaagacgagccaaggtgtcttcatgagtggaaaccc
catgatgggaggcctctttcctgcctgctcttctgtgacaaccataaaaaacaagaccca
gaggttccattctggaggttcctcatcacaggagcagatcagaatagagaattgaagatg
tggtgcactgtgtcttggacttgtctgcaaactgtccgcttttctcctgacatcttcagc
tccatgagtattcttcccagcctgaaagtctgcctggacctctccgctgagtatctgata
ctgagcgatgtgcagagaaaagtcttgtatgtgatggagctgatgcagaaccaagaggag
ggcaaagcttacttcagctccatctcagagttcctccttacccacccagtcctgagcttt
ggcatccaggcagtgagccgctgtcggttaaggcacaccgaagtgctcccagcagaagag
gagagtgacaacttgagtgtagaaggtgctcagggagctggagctgttgaatcagcagca
ggcgtgctgataaaactcttctgtgtgcataccaaggccctacaggatgtgcagattaga
ttccagcctcttcatagccctgacatgagcgcatccatgccttcccacagctctcatgaa
gagtttgcctttccagaccacatggccgatctaaacacagaagggctgggatctgaaaaa
ggatcggtgcatggctctcaaccagacctgcggcgtattgctgatctgcccgtaccagca
gatttcctttctctctcaaatgatgccaaacctaagctgatgactccggatgcattcatg
acaccaagtacatctcttcaacaggtttctgctgccccttctgggttatgccaacaagca
gaaattgcggtatctccaggcagcagcgtcagttccctgactgcagtcacagccatgagt
agcacttctgtcacggatgcctctatgcccaggccgtcggaagacttgactgtgagcccg
aagatgcagctggacactagcctcacgctgagcagcagtggcagcagtctccagactagc
cctaggagccattcggttcttatcccaggcctccctgacaagctaacaccaaaggcacct
attccagtcacgccaggaaacccctctctagcactggaactgcaggaagtggagcccttg
gtggtgccccaggcttctcccacccgcgagcgctcaccagacgtcatttcatctgcttcc
acagccatgtcccaagatatcccagagattgcttccgagactttgcaacgtagctttgca
gcagctccgtctgggctccctgcggaggtgctggagcccagtcatcacgcagacagtatg
gcatccgctgcctcggccttgcatttgctgtctccgaggaaccggcacaattcagagcac
agccaccactctttggacatgcctccagtggaggtggacagattgaatgctccatcgtta
ctggagactgctttaactcaggaaaacgcatcttctgacagtgttgtgagtcagccatgg
ccagcagctcctgacataaccagagaaaccaggaacagcatggcagacagcccaagggat
gaggttgaagaaaagcacaagagctcttcctatcatcgacacagctaccacctgctgcag
catgacagccaggatgctagtgcagaacaaagtgaccatgatgatgaagttgcaagcttg
gcttctacgtcaggtggatttggtgccaaagcgtctacgcagaggctgcctgtgaaggac
tggaaagccaaggcatccccccgggcttccccaaagctaaagcggaagggcaagaaagat
gatggggatgtgaaccagtcgccaagatcgtctaacaaccaggtgacaccagagttccag
gatgagctgatgtgcatattgaggagccaacagcgagagctcactgagctgcgtcagaat
cagatggagctgctgcagagactcacggatcaccttgatgccattcagagctcccttatg
ggccacgtggagagggtgattgactcccagcaggagcaggagcagagaagactagaccga
gcgctgacggaaggacagcagcgcaatgggcagctccaggagcatctgtctcagcagctc
tctcagtccctttccactgccgtgtgtaaccgtctggagaggaccattcgcgaggagatg
aagaagactgtgccccagtgcatttccaagagcatggaccctatcgctggccagctaagt
aacactattgccgccaagctcactgctgttgaggggacactgaaagagagtatcaccaag
ctagtgaaatcaaagaaccttacagataccatcgtgagggcaacggccgataccttgcag
gggccgatccagtcagcgtacagggaagcgtttcagagtgtcgtgttgccagccttcgag
aagagctgccagtccatgttccagcaaatcaatgacaccttcaagcagggcacacaggaa
tatatccaacagcttgagactcacttgaagaacaaaaaggtacgagaacaggaggcccgg
gacccgctgctgaatcagcttcgacagctcatcggcaccttccagagcaccaccgagcag
ctggcggccaccgtcgcagccagcgtccatgctgaggtgcagcatcagctgcatattatc
gtgggcaacatgcaggagtctattttggcccaggtgcagagagtcattaaaggagaagtg
agcctggctatgaaggagcaacaagcagccgtcacctcgagcatcgtccaggcaatgcgc
tcagcggccgggactccaatcccctccgctcacttggatttccaatcacagcaaactcac
atccttcagctgctccagcagggacacctcaaccaagctttccagcaggctctgacagca
gctgatctcaacctggtcctgtacgtctgtgagactgtggatactcagcaagtattcgga
cagcatccgtgcccgctgtcccagccagtgctgctctctctcattcagcagctctcctcg
gatttgggtactcgtacagaactgaagctgaattacttggaggaagcggtgatgcatctg
gaccacagtgaccccatcacccgagaccacatggggtcagtcatgaaccaggtgcggcag
aagctcttccagttcctccaggtggaaccccacaacacgctgagcaaacctgcccgtcgc
ctcatgatcatgctccagggcctggtcacccctggcatgacctag
DBGET
integrated database retrieval system
