Charadrius vociferus (killdeer): 104294910
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Entry
104294910 CDS
T08577
Symbol
SCN1A
Name
(RefSeq) sodium channel protein type 1 subunit alpha isoform X1
KO
K04833
voltage-gated sodium channel type I alpha
Organism
cvf
Charadrius vociferus (killdeer)
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cvf04040
]
104294910 (SCN1A)
Ion channels [BR:
cvf04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
104294910 (SCN1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
New_glue
FraC
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
104294910
NCBI-ProteinID:
XP_009892894
LinkDB
All DBs
Position
Unknown
AA seq
2014 aa
AA seq
DB search
MEQSVLVPPGPDSFQYFTRESLAAIEQRIAAEKAKNPKQDRKDNDDENGPKPNSDLEAGK
TLPFIYGDIPPGMVSEPLEDMDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRK
IAIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFC
LEDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPENFTLETNITSQLNSTI
GENGTLVNSTVTPFDWKGYIEDESHFYFLEGQNDALLCGNSSDAGQCPEGYTCVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLI
LAVVAMAYEEQNQATMEEAEQKEAEFQQMLEQLKKQQEAAQAAAVAAAAVTASAESREPS
AAGEAGGLSESSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFHKSESEESIRR
KGFRLSIEGNRLTYEKKYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDIGSENDFA
DDEHSTFEDNDSRRDSLFVPRRHGERRNSNISQASRSSRMLAVFPVNGKMHSTVDCNGVV
SLVGGPSVPTSPVGQLLPEVIIDKPATDDNGTTTETEMRKRISSSFHVSMDFLEDPALRV
RAMSIASILTNTVEELEESRQKCPPCWYKFANIFLIWDCSPHWLKVKHIVNLVVMDPFVD
LAITICIVLNTLFMAMEHYPMTDEFNNVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEG
WNIFDGFIVTLSLVELGLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALG
NLTLVLAIIVFIFAVVGMQLFGKNYKECVCKIASDCVLPRWHMQDFFHSFLIVFRVLCGE
WIETMWDCMEVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAVTDDDNEMNN
LQIAVARMQKGIDYVKRKAREFIQKAFVKKQKALDEIKPLEDLNNKNSCISNHTTVELSK
DHDYIKDANGTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEE
FSSESDLEESKEKLNSSSSSEGSTVDIGLPAEEQPEEQPEEAQEPEACFTEGCVRRFKCC
QVSIEEGRGKQWWNLRKTCFKIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTML
EYADKVFTYIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAI
KSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGK
FYYCVNTTTDERFEVDQINNFSQCEELIKNNQSARWKNVKVNFDNVGFGYLSLLQVATFK
GWMDIMYAAIDSRDVLQQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKK
FGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTQQVFDISIMILIC
LNMVTMMVETDDQSKEMENILYWINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVV
ILSIVGMFLAEMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFN
IGLLLFLVMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTSAGWDGLLAP
ILNSGEPDCDPNKAHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFGVA
TEESAEPLSEDDFEMFYEVWEKFDPDATQFMEFEKLSDFAAALEPPLHLPKPNKVQLIAM
DLPMVSGDRIHCLDILFAFTKRVLGESGEMDALRIQMEDRFMAANPSKVSYEPITTTLKR
KQEEVSAVIIQRAYRRHLLKRTVKQASFIYNKNKTEGGAGQGMKDEILIDKLNENSFTEK
TDITASTAVCPPSYDHVTRPVKGKHEKEDKDVQK
NT seq
6045 nt
NT seq
+upstream
nt +downstream
nt
atggagcagtcagtgcttgtaccaccaggaccagacagcttccaatacttcactagagag
tctcttgcagctattgaacaacgcattgctgcagaaaaagctaagaatcctaaacaagat
cgtaaagacaatgatgatgaaaatgggccaaagccaaacagtgatttggaggcaggaaaa
acacttccgtttatatacggtgacatacctccaggaatggtgtctgagcccttggaagac
atggacccatattacatcaataaaaaaacctttatagtattgaataaagggaaggcaatc
ttccgattcagtgccacctctgccctgtacattttaactcccttcaatcctcttagaaaa
atagctattaaaattttggtacattcattattcagcatgcttatcatgtgcactattttg
accaactgtgtatttatgaccatgagtaaccctccggactggacaaagaatgtagagtat
acgttcactggaatttacacatttgagtcactcataaaaatcattgcaagaggcttttgc
ttagaagattttacttttcttcgagatccatggaactggcttgatttcactgtcattacc
tttgcatatgtgacagagtttgtggacctgggcaatgtctcagcgttgagaacattcaga
gttctccgagctttgaaaacaatatcagtcattccaggcttgaagactatcgtgggagcc
ctaattcaatctgtgaagaagctctcggacgttatgatcctgactgtattttgtctgagt
gtatttgcactaatagggcttcagctgttcatgggcaacttgaggaataaatgcctgcag
tggcctccagaaaattttactctggaaacaaatattacgtcccagctaaacagcaccata
ggtgaaaatggtacattggttaattcaacagtgactccatttgactggaaggggtacatt
gaagatgaaagtcatttttattttctggaagggcaaaacgatgctctgctttgtgggaat
agctctgatgctgggcagtgcccagagggatatacatgcgtgaaagctggtagaaacccc
aattatggctacacaagttttgacaccttcagctgggctttcttgtcactatttcgcttg
atgactcaagacttctgggaaaacctttatcaattgacactacgtgctgctgggaagaca
tacatgatattttttgttctggtgatttttctgggttctttctacttgatcaacttgatc
ttggctgtggtcgccatggcctacgaagaacagaatcaagcaactatggaagaagcagag
cagaaagaggcagaatttcaacagatgctggaacaactaaagaagcaacaagaagcagct
caggcagcagcggtggcagcagcagcagtaacagcatccgcggagtcaagggagcccagt
gctgcgggagaagcaggagggctctcagaaagttcctcagaggcatcaaaattgagctca
aaaagtgcaaaagagagaagaaacagaaggaaaaaaagaaaacagaaagaacagtctgga
ggagaggaaaaagatgaagatgaatttcacaagtctgaatcagaagaaagcatcagaagg
aaaggtttccgattatctattgaaggcaatagattgacatacgaaaagaagtattcttct
ccacatcagtctttgctgagcattcgtggctccctgttttccccaaggcgcaatagcaga
acaagtcttttcagcttcagaggtagagcaaaggatataggatcagaaaatgactttgct
gatgatgagcacagcacttttgaagacaatgatagcagaagagattctctctttgtgccg
cgcagacacggtgaacggcgcaacagtaacattagtcaggccagtaggtcatccaggatg
ctggcagtgtttccagtgaatgggaagatgcacagcactgtggattgcaatggggtggtt
tccctggttggtggaccatctgttcctacatcgcctgttggacagcttctgccagaggtg
ataatagataaaccagctactgatgacaatggcaccactacagaaacagaaatgaggaag
agaatatcaagctctttccatgtttctatggacttcctcgaagatccagctttaagggta
agagccatgagtattgctagcattctcacaaacactgtggaagaacttgaagaatcaaga
cagaaatgcccaccatgttggtataaatttgcaaacattttcttgatctgggactgcagt
ccacattggctaaaagtaaaacatatcgtcaacttagtggtaatggacccatttgttgac
ctggctatcacaatttgcattgttttaaatacactctttatggctatggaacattatccg
atgaccgatgaattcaataatgtactttcagttggaaatctggtcttcactggaatcttc
acagcagaaatgtttctcaagataattgcaatggatccttactattatttccaggaaggc
tggaatatttttgatggttttattgtaacacttagcttggttgagcttggtcttgcagat
gtggaaggactctcagttcttcgatcattcagattgttacgagttttcaaactggcgaaa
tcttggccaacactaaatatgctgataaaaattattggtaactctgtgggagctctgggt
aacctgaccctggtgctggccatcattgtcttcatttttgctgtggttgggatgcagctg
tttgggaaaaactacaaggaatgtgtctgcaaaatcgcaagtgactgtgtgcttccacgc
tggcacatgcaagatttttttcactcgtttttgatcgtatttcgagtgctgtgtggagaa
tggatagaaacgatgtgggactgcatggaggttgcaggccaagccatgtgccttactgtc
ttcatgatggtcatggtgattggaaacctagtggtactgaacctatttttggccttgctc
ttgagctcatttagtgcagacaaccttgctgtgacagacgatgacaatgaaatgaataat
ctccaaattgctgtagcaagaatgcagaagggcatagattacgtgaaaagaaaagcacgt
gaattcatccaaaaagcctttgttaaaaaacaaaaagctttagatgaaatcaagccactt
gaagatttgaacaacaaaaatagctgcatttctaaccatacaactgtggaactaagcaag
gatcatgactatattaaagatgcaaatggaacaactagtggcataggcacaggcagcagt
gtggaaaaatacataattgatgaaagtgattacatgtcattcataaacaacccaagtctc
actgtgacagttcccattgctgtgggtgaatctgactttgaaaacctaaacacagaggaa
tttagtagtgaatcggacttggaagaaagcaaagagaagttaaattcatctagttcatca
gaaggtagcacagttgatattggacttcctgcagaagaacaaccagaagaacaacctgaa
gaagcccaggagccagaggcctgcttcacagaaggctgtgtaagaaggttcaaatgctgt
caagtaagtatagaagaagggagaggaaagcagtggtggaaccttagaaaaacctgcttc
aagattgtcgaacacaactggtttgagactttcattgtctttatgattctgctcagtagt
ggagctctggcttttgaagacatatatattgaacagcgtaaaactatcaagaccatgctg
gaatatgctgacaaggtcttcacttacatcttcattctggaaatgctgctgaagtgggtg
gcctatggctatcaaacatactttactaatgcctggtgctggctggacttcctgattgtc
gatgtctctttggttagcttaacagcaaatgcattgggttactctgaacttggtgccatt
aagtcccttaggacactaagagctttgagacctctaagagctttgtcacgatttgaaggc
atgagggtggttgtgaatgcccttttaggagcaattccatccatcatgaacgtgcttctc
gtttgtcttatattctggctaattttcagcatcatgggagtaaatctgtttgctggcaag
ttctactactgtgttaacaccacaaccgatgaaaggtttgaagtcgaccaaatcaacaat
tttagtcagtgcgaggaactcataaaaaacaatcaaagtgcccgatggaaaaacgtgaaa
gtaaactttgataatgtaggatttgggtatctatctttacttcaagtagctacatttaaa
ggctggatggatattatgtatgcagcaattgactcaagagatgtattacagcaacccaag
tatgaagacaacctgtacatgtatttgtattttgtcatctttatcatttttgggtctttt
ttcaccctgaacctgttcattggtgtcattattgataacttcaatcagcaaaaaaagaag
tttggaggtcaagacatatttatgacagaagaacagaagaaatactacaatgcaatgaaa
aagctgggatccaaaaaaccacaaaaacccataccaagaccagggaacaaattccaaggc
atggtctttgattttgtgacacagcaagtctttgacatcagcattatgattcttatttgt
cttaacatggttaccatgatggtagaaactgatgaccagagtaaagaaatggaaaatatt
ttatactggataaacctggtgttcattgtccttttcactggagaatgtgtcctgaaatta
atttcacttcgccattactatttcactataggctggaatatttttgatttcgtagttgtc
attctctctatagtaggtatgtttttagctgagatgattgaaaagtattttgtatccccc
acactattcagagtgatccgacttgccagaattggtcgcatcctgcgtctcattaaaggc
gcgaagggaatccgcactctgctttttgctttgatgatgtctcttcctgctttgttcaac
attggtctgctgctgttcctggtcatgtttatctatgcgatatttggcatgtccaacttt
gcctatgtcaagagggaagctggtatagatgacatgttcaactttgaaacgtttggcaac
agcatgatctgcctatttcaaatcaccacatctgctggctgggatggtctgctagcccca
attcttaacagtggggagccagactgtgaccctaacaaagctcatccggggagctctgtg
aaaggcgactgcggcaacccttctgttgggattttcttctttgtcagctacattatcata
tcatttctggtagtggtgaacatgtacattgccgtgattttggagaacttcggtgttgct
actgaagaaagcgctgaacccttgagcgaggatgactttgagatgttctatgaagtctgg
gagaagtttgatcctgatgcaacacaattcatggaatttgagaaattgtctgattttgca
gcagcgcttgagcctcctcttcatctacccaaaccaaacaaagtccagcttattgcaatg
gatctgcccatggtaagcggcgacagaattcactgccttgacatcttgtttgctttcaca
aagcgtgtgttgggggaaagtggggagatggacgccctcagaatacagatggaagatcgt
tttatggcagccaatccttcaaaagtttcctatgaaccaattacaaccacattaaaacga
aaacaggaggaagtatctgctgtcattattcaacgggcttacagacgtcaccttttaaaa
cgaacagtaaaacaagcttcctttatctataacaaaaacaaaacagaaggaggggctggt
cagggtatgaaagatgaaatccttattgacaagttaaatgaaaactcatttacagagaaa
accgatataactgcatcaacagcagtttgtccaccttcttatgatcacgtaacaaggcca
gtcaaaggaaagcatgaaaaggaagataaagatgttcagaaataa
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