Charadrius vociferus (killdeer): 104295081
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Entry
104295081 CDS
T08577
Symbol
DDX5
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104295081 (DDX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvf03041
]
104295081 (DDX5)
03009 Ribosome biogenesis [BR:
cvf03009
]
104295081 (DDX5)
Enzymes [BR:
cvf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104295081 (DDX5)
Spliceosome [BR:
cvf03041
]
Complex A
U1 snRNP components
U1 related factors
104295081 (DDX5)
Complex B
104295081 (DDX5)
Ribosome biogenesis [BR:
cvf03009
]
Eukaryotic type
Pre-60S particles
Helicases
104295081 (DDX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
104295081
NCBI-ProteinID:
XP_009893086
LinkDB
All DBs
Position
Unknown
AA seq
608 aa
AA seq
DB search
MPGYSSDRDRGXVRGFGAPRFGGSRGGPLSGKKFGNPGEKLTKKKWNLDELPKFEKNFYQ
EHPDVVRRTVQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAI
QAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
QQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLR
RCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHI
NIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRK
MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN
SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLLQLIEDRGS
GRSRGDRRDRYSAGKRGGFSSFRERENFERTYGALGKRDFGAKTQNGAYSAQSFSNGTPF
GNGFAAAGMQAGFRAGNPAAGAYQNGYDQQYGSNIANMHNGMNQQQYAYPATGAAPMIGY
PMPTSYSQ
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggtattccagcgacagggatagagggtgagtccgggggtttggagccccccgt
tttggaggaagtagaggtgggcctctctctgggaagaaatttggaaaccctggggaaaaa
cttacaaaaaagaaatggaatttagatgagctgcccaaatttgagaagaacttctatcaa
gaacatcctgatgtagttagacgtactgtgcaagaagttgaacagtacagatcaagcaaa
gaagtcacagttaggggccataactgtccaaagccgattataaacttctatgaagctaac
tttcctgcaaatgttatggaagtaattcagaggcagaacttcactgaaccaactgctatt
caagcacaaggttggcctgttgcattgagtggattggatatggttggagtggcacagact
ggatcagggaaaacactgtcttacttgttgcctgctattgtgcatataaatcatcagcca
ttcctggagcgaggagatggacctatttgtcttgtgttggcaccaactcgtgagctggct
caacaagtgcagcaggtagctgctgaatatagcagagcatgccgtttgaagtctacatgt
atttatggaggtgctccgaaaggaccacaaattcgtgacttagaaagaggtgtggaaatc
tgcattgcaacacctggaagacttatagacttcttagaagctggaaagaccaatctcagg
aggtgtacttaccttgtccttgatgaagctgacaggatgcttgacatgggatttgaacct
cagatcagaaaaattgtggatcagataagacctgacaggcaaactctgatgtggagtgct
acatggccaaaggaagtaagacagctggctgaagactttttgaaagaatatgtacacatc
aacatcggtgcattagaactaagtgcaaatcataacattcttcagattgtggatgtgtgt
catgatgtagagaaagatgacaagcttattcgtttgatggaagaaataatgagtgagaag
gaaaataaaacaattgtttttgtggaaaccaaaagacggtgtgatgatcttaccaggaaa
atgaggagagatgggtggccagcaatgggtattcatggtgataaaagtcagcaggagagg
gactgggttctaaatgaattcaaacatggaaaagcaccaatcctgattgctacagatgtt
gcatccagaggtctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaac
tcctcagaggactatatccaccgaattggacgaactgcccgcagtaccaaaacaggcaca
gcatacacattctttactcctaacaatattaagcaagtaaatgacctcatctctgtgctt
cgggaggctaatcaagccatcaaccccaaattgcttcagttgattgaagacagaggttca
ggtcgttcccgaggtgatcgacgtgacagatattctgcgggcaaaaggggtggatttagt
agttttagagagagggagaactttgagagaacctatggtgcgctaggaaagagagacttt
ggagcaaaaactcaaaatggggcttacagtgcccagagtttcagtaatggaacacctttt
ggaaatggctttgcagctgcaggcatgcaggctggcttcagggctggtaaccctgctgca
ggagcttaccagaatggctatgatcagcagtatggaagtaatattgcaaatatgcacaat
ggcatgaaccaacagcagtatgcatatcctgccactggtgctgctcctatgataggttac
ccaatgccgacaagttattctcaataa
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integrated database retrieval system
