Charadrius vociferus (killdeer): 104295109
Help
Entry
104295109 CDS
T08577
Symbol
MSH6
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104295109 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvf03400
]
104295109 (MSH6)
DNA repair and recombination proteins [BR:
cvf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104295109 (MSH6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PWWP
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
104295109
NCBI-ProteinID:
XP_009893116
LinkDB
All DBs
Position
Unknown
AA seq
1265 aa
AA seq
DB search
MEGYPWWPCLIYNHPTERTIVRGKGKSTRVHVQFFDDSPTRGWVSIKYLRPYKGSSDGET
LKGGMFYSTKPEIKRAMVLADDAMSKDKTKRLELAVCSEPSDTEEEEEEEEEMEQMSDSA
SGNSDDCNSEEDVKSNKRVMNRESVIKAKRRRVLDSDSDHDGSDVEFKPDVKEAASSEEA
SSGVDENESTDTETDAESVAESPIKVPSKRKRREINKPAKRSSLENDRSETPKRAATVSL
EAKSKLTSFAAPDSFESQANACSGGISGFAVWEHEKLDWLQEGKKKDAHRKRQSDPDYDP
CTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVIFYKVGKFYELYHMDAVTGVNELGLIFMK
GTWAHSGFPETAFGRFSDVLVQKGYKVARVEQTETPEMMETRYKSMAHPTKFDKVVRREI
CRIITKGTQTYSVLDCDPSENHNKYLLCVKEKEDSSGQRVYGVCFVDTSVGKFYVGQFSD
DRHCSRFRTLVAHYTPVQVLYEKGNLSVDTQKILKGSLVSCIQEGLISGSQFWNASKTLK
VLLEEGYFKEKQNSENGCSLPSVIKSLTSESDSLGLTPGENSELALSALGGCVFYLKKCL
IDQELLSLANFEEYVPVDIDTAKTTSSSSFFAKTDQRMVLDGVTLMNLEVLQNGTNGTTE
GTLLERIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAVEDLLAVPDKMSEVSEHLKKL
PDLERLLSKIHSIGSPLKSQNHPDSRAIFYEEIKYSKKKIADFLSALEGFKVMNEIVDVM
EEIASDFKSKVLKQLVTRKAKNPNGRFPDLSGELKRWDTAFDHNQARKTGVITPKAGFDP
DYDKALQDIKSVEEDLHKYLDKQRKLLGFKSMLYWGAGKNRYQMEIPESAISRNLPEEYE
LKSTRKGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMRRLFYNFDQNSKDWQTAVECIA
VLDVLMSLANYSQDGDGPLCRPVILLPVDSAPPFLELKNSRHPCITKTFFGDDFIPNDIV
IGSKDEDSSSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQVGCYVPAEVCRLSPIDRVFT
RLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVKEL
AEKIKCRTLFSTHYHSLVEDYSHNMAVRLGHMACMVENESEDPSQETITFLYKFIEGACP
KSYGFNAARLANIPEEVIQKGHRKAKEFEKITISLRVFRYLCLVVDGATSDANAVQKLTT
MINHL
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttatccttggtggccgtgtctcatatacaaccatccgactgaaagaacaata
gtcagaggaaaaggaaaatccactcgtgtccacgtgcagttttttgatgacagccctaca
aggggctgggtcagtataaaatatctgaggccatataaaggttcatcagatggggagaca
ctgaagggaggtatgttttatagcacaaagcctgaaattaaaagagcaatggtgctagca
gacgatgcaatgagtaaagataaaactaagcggcttgaactggcagtatgcagtgaacct
tcagacacagaggaggaggaggaggaagaagaggaaatggagcagatgagtgacagtgca
tcaggcaacagtgatgactgcaatagtgaggaagatgtgaagagtaataagcgagtaatg
aacagggaaagtgtgataaaagccaaaagaagaagagtgttggactctgatagtgatcac
gatggctctgatgtagagttcaagcctgatgtgaaagaagcagcaagcagcgaggaagct
agtagcggtgtggatgaaaatgaatctactgacacagagacagatgcagagagtgttgca
gagagtcccataaaagtcccttctaaacgaaagagaagagagataaacaagcctgctaaa
aggagtagcttagaaaatgaccgctctgaaacacccaaaagagcagcaacagtttcttta
gaagccaagtctaagttgacatcatttgcagcacctgacagttttgaatctcaagcaaat
gcttgcagtggaggcatcagtggcttcgcagtatgggagcatgagaagcttgattggctg
caggaagggaaaaagaaggatgcgcacaggaaacggcagagtgaccctgattatgaccca
tgtacgctgtatgtacctgaggactatctcaacaagtgtacgccaggaatgcggaggtgg
tggcagctgaaaagtcaaaactttgatgctgtgattttctacaaagttggaaaattctat
gagttgtatcatatggatgcagtcactggtgtaaatgagttgggcctcatctttatgaaa
ggtacttgggcccattctggttttccagaaactgcatttggcagattctctgatgttcta
gtgcagaaaggctacaaggtagcccgtgttgagcaaacagaaactcctgaaatgatggaa
acgcgctacaagtcaatggcccacccaacgaaatttgacaaggttgtacgcagagaaata
tgcagaattatcactaaaggaacacagacttacagtgttctagactgtgatccctctgag
aaccataacaaatatcttctgtgcgttaaggaaaaagaagactcctctggacaacgtgtt
tatggggtctgctttgttgacacatcagtggggaagttttatgtaggccagttctcagat
gaccggcactgttcgaggtttaggactttagtagcgcattacactcctgtgcaggtactg
tatgagaaggggaacctgtctgtggacacacagaagatactgaagggctcacttgtttct
tgcattcaggaagggctgatctctggttcccagttctggaatgcatctaaaacactaaaa
gtccttctcgaagaaggatatttcaaggaaaaacagaactctgaaaacggatgttctcta
ccctctgtaatcaaatctctgacttcagagagtgactcgctgggattaactcctggtgaa
aacagtgaattagctttgtcagctcttgggggatgtgtcttctatctcaaaaaatgtctg
attgatcaggagctgttatcgctggcaaacttcgaggagtatgtccctgtggatattgat
actgcaaaaactacgagttcaagtagtttctttgccaaaactgaccagcggatggtgctg
gatggagtcaccctgatgaacttggaagtcctgcagaatggaaccaatggaaccacagaa
ggtactttgttggaaaggattgattcttgttgtacgccatttgggaagcgactcctgaaa
cagtggctctgtgctccactttgtaatcctaaatccatcaacgatcgtttagatgctgtt
gaggaccttctggcagtgccagataaaatgtcagaagttagtgagcacctgaagaaactt
cctgaccttgaaaggctgctcagcaaaattcacagtattggatcgccacttaaaagtcag
aaccatcctgacagcagggccatcttttacgaagaaatcaaatacagcaaaaaaaaaatt
gctgactttttgtctgcactggaggggtttaaagtaatgaatgaaattgtcgatgtcatg
gaagaaattgccagtgacttcaaatctaaagtccttaagcagctagtcacccgcaaagcc
aaaaatccaaatggccgcttcccagacttgagcggagagcttaaaagatgggatactgct
tttgatcataaccaggctcgaaagacaggagtgattactccgaaggcgggttttgacccc
gattatgataaagcactacaggatattaaatctgttgaggaagatctccacaagtacctg
gataagcaacgcaaactgcttggattcaaatccatgctgtactggggggcaggaaaaaac
cgatatcaaatggaaataccggaaagtgcaatatcacgtaatttgcctgaggagtacgag
ttgaagtcaaccaggaagggatataaacgttactggaccaaggagattgagaagatgctg
gctgcaatggttaatgctgaagagcgcagagatgcagcgctaaaagactgcatgaggcgt
ttgttttacaacttcgatcaaaatagcaaagactggcagacagcggtggaatgcattgct
gtgttagatgtcttgatgtcccttgctaactacagtcaagatggtgatggaccactgtgc
cgacctgtaattctactgcctgtggatagtgctcctcccttcctggaacttaaaaactca
cgccatccatgcattacaaaaactttctttggggatgattttattcctaatgacatcgtg
ataggcagcaaagatgaagacagcagtagtgaagcttcctgtgtgttagtaactggcccg
aatatgggtggcaaatctacgctcatgagacaggctggtctcctggttataatggctcaa
gtgggatgctacgtacctgctgaagtctgcaggctttcgccgattgacagagtatttacg
aggcttggcgcctcagacagaattatgtcaggtgaaagtaccttctttgttgaattgagt
gagacttccagcattctccagcatgcaacagagcattcccttgttcttgtggatgaacta
ggcagaggcacagctacttttgatggaacagctatagcgagtgcggttgtgaaagaactt
gcagagaaaatcaagtgtcggactctgttctccacacactaccattcgctggtagaggat
tattcccacaacatggcagtgcggcttggccacatggcatgtatggttgaaaacgagagt
gaagacccaagccaggaaacaattacattcctgtataagttcattgaaggagcatgtcca
aagagctatggcttcaatgcagcaagacttgctaatattccagaggaggttattcagaag
gggcacagaaaagcaaaagagtttgaaaaaataaccatttcactgagagtatttaggtat
ctgtgcctggtggtggatggtgcaacaagtgatgcaaatgctgttcagaaacttaccaca
atgatcaaccatctttaa
DBGET
integrated database retrieval system
